NC_062451.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_062451.1 Euphorbia humifusa chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 163329 Tables: 1 2 This is table 1 of 2 ( 167 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 181--207 13 2.1 13 100 0 54 48 14 0 37 1.45 311--357 16 2.8 17 93 6 87 40 6 4 48 1.48 490--536 16 2.8 17 93 6 87 40 6 4 48 1.48 276--632 179 2.0 179 98 0 696 45 14 8 32 1.74 2606--2649 22 2.0 22 100 0 88 31 22 0 45 1.53 5127--5153 13 2.1 13 100 0 54 48 7 0 44 1.31 5238--5275 19 2.0 19 100 0 76 21 15 0 63 1.31 5516--5543 12 2.3 12 100 0 56 50 0 7 42 1.30 5536--5616 16 5.1 16 72 12 62 38 3 4 53 1.41 5600--5630 11 2.7 11 95 5 53 38 0 6 54 1.26 5592--5642 19 2.7 18 81 6 57 37 1 3 56 1.29 6013--6055 20 2.1 20 87 12 61 79 2 9 9 1.03 6013--6055 10 4.3 10 82 8 52 79 2 9 9 1.03 7436--7464 14 2.1 14 100 0 58 27 41 0 31 1.56 7993--8054 18 3.4 17 72 18 54 64 0 16 19 1.29 7992--8054 12 5.2 12 76 14 58 63 0 15 20 1.31 8332--8384 26 2.0 26 96 0 97 35 9 0 54 1.33 8533--8575 21 2.0 21 100 0 86 72 0 4 23 1.04 9623--9658 18 2.0 18 100 0 72 55 11 0 33 1.35 9657--9690 17 2.1 16 88 5 50 58 2 5 32 1.37 9782--9841 19 3.2 19 100 0 120 35 5 5 55 1.44 9851--9906 18 3.0 18 90 10 94 55 0 5 39 1.23 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9900--9942 11 3.9 11 87 0 68 51 0 4 44 1.22 9855--9942 18 4.5 19 82 13 90 53 0 4 42 1.21 9851--9928 38 2.0 38 87 5 111 55 0 5 39 1.22 10022--10051 15 2.0 15 93 0 51 56 13 0 30 1.37 10110--10142 15 2.2 15 100 0 66 39 0 6 54 1.25 10257--10288 11 2.9 11 95 0 55 28 9 12 50 1.71 10377--10417 12 3.2 12 81 18 55 53 0 0 46 1.00 10375--10417 13 3.1 15 77 19 56 51 0 0 48 1.00 10657--10725 23 2.8 24 76 14 70 30 5 1 62 1.27 10683--10786 15 7.1 15 69 21 51 24 5 0 69 1.16 10743--10786 20 2.2 20 100 0 88 25 4 0 70 1.06 13007--13039 16 2.0 17 94 5 59 66 9 6 18 1.40 16196--16235 21 1.9 21 94 0 71 20 7 2 70 1.24 27798--27823 12 2.2 12 100 0 52 38 7 0 53 1.30 28146--28259 4 28.8 4 74 15 58 30 0 0 68 0.96 28146--28257 49 2.3 48 92 3 181 30 0 0 68 0.95 29860--29894 18 1.9 18 88 0 52 34 2 11 51 1.53 31020--31048 13 2.2 13 100 0 58 13 13 0 72 1.13 31269--31312 22 2.0 22 100 0 88 54 4 13 27 1.58 31705--31748 15 2.9 15 86 0 52 40 6 9 43 1.63 31764--31824 22 2.8 22 71 0 59 57 0 1 40 1.08 31903--31935 11 3.0 11 91 8 50 60 3 9 27 1.42 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 32223--32257 17 2.1 17 94 0 61 20 8 17 54 1.68 33546--33585 21 1.9 21 100 0 80 40 10 0 50 1.36 33540--33597 21 2.6 23 78 13 75 36 6 1 55 1.37 33589--33617 14 2.1 14 100 0 58 41 0 13 44 1.44 33620--33663 23 1.9 23 95 0 79 52 4 0 43 1.22 33620--33661 13 3.5 13 78 18 54 52 4 0 42 1.22 33823--33882 31 1.9 31 83 6 77 41 6 3 48 1.46 33855--33891 18 2.1 18 89 0 56 48 2 2 45 1.30 33904--33948 22 2.0 22 91 0 72 42 6 6 44 1.57 33938--33968 15 2.1 15 100 0 62 19 6 0 74 1.03 33948--33997 21 2.4 21 82 0 64 16 4 2 78 1.00 34353--34393 20 2.0 20 100 0 82 53 9 4 31 1.55 34867--34914 25 1.9 25 86 0 69 64 4 20 10 1.41 34944--34970 12 2.2 12 100 0 54 44 7 14 33 1.73 38855--38905 24 2.1 24 85 0 66 37 3 0 58 1.16 38868--38905 12 3.2 12 96 0 67 34 5 0 60 1.19 39064--39093 15 2.0 15 100 0 60 46 6 6 40 1.56 39303--39337 13 2.7 13 100 0 70 54 5 8 31 1.54 39409--39465 25 2.2 26 81 12 73 21 10 3 64 1.39 39589--39618 15 2.0 15 100 0 60 26 0 0 73 0.84 39643--39673 15 2.1 15 100 0 62 54 6 0 38 1.26 39671--39704 16 2.1 17 88 5 52 55 0 8 35 1.31 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 39679--39731 23 2.3 22 87 6 70 54 0 5 39 1.24 39621--39704 17 5.2 16 80 12 57 57 2 4 35 1.33 39704--39735 15 2.1 15 94 0 55 56 0 9 34 1.32 39935--39968 16 2.1 16 88 0 50 32 0 11 55 1.36 39994--40019 13 2.0 13 100 0 52 38 0 7 53 1.30 39997--40040 18 2.5 17 88 3 61 43 0 4 52 1.22 40009--40061 25 2.0 27 85 7 74 41 0 3 54 1.18 46025--46072 25 1.9 25 86 0 69 33 0 2 64 1.05 46087--46113 12 2.2 12 100 0 54 51 0 7 40 1.30 46130--46181 22 2.5 22 84 6 63 40 3 0 55 1.18 46148--46181 10 3.2 10 88 12 50 41 0 0 58 0.98 46163--46200 16 2.3 17 86 9 60 42 0 2 55 1.14 46162--46415 17 14.5 18 73 18 64 34 3 0 61 1.17 46216--46271 14 3.7 16 79 11 57 30 7 1 60 1.33 46240--46404 24 6.6 25 73 18 103 34 3 0 62 1.11 46195--46408 15 13.7 15 75 16 143 33 3 0 62 1.16 46282--46418 39 3.8 37 89 9 203 35 0 0 63 1.00 46313--46417 26 4.2 24 73 20 90 36 0 0 63 0.94 46152--46418 15 16.9 15 70 19 118 35 2 0 61 1.17 46409--46444 13 2.8 13 95 0 63 33 11 5 50 1.61 46428--46471 20 2.2 21 88 8 65 38 6 4 50 1.50 46464--46492 14 2.1 14 100 0 58 65 0 6 27 1.18 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 51235--51304 20 3.4 20 72 12 61 7 10 0 82 0.83 51255--51310 17 3.3 17 92 0 85 5 10 0 83 0.78 52347--52387 20 2.0 20 100 0 82 46 4 19 29 1.71 52395--52440 21 2.2 21 88 3 67 52 6 13 28 1.65 54615--54728 35 3.4 34 74 18 103 28 7 2 61 1.37 54641--54668 13 2.2 13 100 0 56 32 7 0 60 1.24 54683--54728 12 3.9 12 94 5 85 26 6 0 67 1.15 54757--54791 17 2.1 17 94 0 61 31 2 11 54 1.51 54782--54830 20 2.5 19 93 6 80 44 4 0 51 1.20 54784--54841 16 3.4 16 88 9 71 46 3 0 50 1.18 54861--54904 15 2.9 15 83 13 54 22 2 2 72 1.07 61487--61528 20 2.1 20 100 0 84 30 9 11 47 1.72 63395--63421 13 2.1 13 100 0 54 14 22 0 62 1.31 63717--63758 21 2.0 21 95 0 75 45 7 9 38 1.64 63756--63789 15 2.1 17 89 10 54 61 0 5 32 1.20 64023--64055 13 2.5 13 86 13 50 57 9 3 30 1.45 64102--64134 14 2.2 15 89 10 50 63 0 12 24 1.28 64284--64318 14 2.4 14 95 4 61 71 0 5 22 1.07 64346--64379 16 2.1 16 100 0 68 55 5 0 38 1.24 64284--64385 14 6.9 16 78 9 58 63 3 1 30 1.23 68755--68780 13 2.0 13 100 0 52 23 15 15 46 1.83 70935--70986 15 3.7 15 80 15 74 38 1 5 53 1.36 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 70944--70995 12 4.1 12 86 13 77 40 1 7 50 1.42 70935--71001 27 2.4 27 92 2 116 37 1 7 53 1.38 71037--71085 14 3.4 14 83 10 64 44 0 0 55 0.99 71033--71084 8 6.6 8 85 14 65 46 0 0 53 1.00 71105--71134 14 2.1 14 100 0 60 26 0 6 66 1.16 71250--71275 13 2.0 13 100 0 52 46 0 0 53 1.00 71254--71295 20 2.1 20 95 0 75 38 2 0 59 1.10 71961--71999 14 2.8 14 88 0 60 41 2 15 41 1.61 73221--73259 19 2.1 19 100 0 78 20 5 0 74 1.01 73959--74002 22 1.9 22 86 9 61 38 15 2 43 1.60 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2