NC_064948.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_064948.1 Urtica dioica chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  147799

    Tables:   1   

    This is table  1  of  1  ( 16 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  1902--1937                         17       2.1      17          94        0         63      50   5    0    44   1.25

  3619--3643                         11       2.3      11          100       0         50      56   0    16   28   1.41

  6307--6344                         12       3.2      12          100       0         76      31   0    42   26   1.56

  27233--27257                       2        12.5     2           100       0         50      48   0    0    52   1.00

  27398--27438                       20       2.0      20          100       0         82      29   14   24   31   1.95

  33438--33463                       13       2.0      13          100       0         52      53   7    23   15   1.67

  43915--43953                       18       2.2      18          100       0         78      33   10   5    51   1.58

  43957--43998                       17       2.4      18          80        4         50      57   9    2    30   1.44

  45520--45570                       28       1.9      25          92        8         75      25   13   11   49   1.76

  60736--60773                       19       2.0      19          100       0         76      26   15   5    52   1.64

  84403--84464                       21       2.7      23          73        19        67      12   24   9    53   1.69

  86835--86871                       18       2.1      18          100       0         74      32   5    27   35   1.79

  113212--113304                     43       2.2      43          98        0         177     40   25   8    24   1.83

  118121--118146                     13       2.0      13          100       0         52      61   7    23   7    1.49

  140582--140618                     18       2.1      18          100       0         74      35   27   5    32   1.79

  142989--143050                     21       2.7      23          73        19        67      53   9    24   12   1.69
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!