NC_064966.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_064966.1 Uncaria macrophylla chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155138
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117--160 15 2.9 15 89 3 61 36 4 0 59 1.18
4252--4285 16 2.1 17 94 5 61 47 0 2 50 1.16
5390--5421 16 2.0 16 100 0 64 25 6 18 50 1.70
6375--6404 14 2.1 14 100 0 60 80 0 0 20 0.72
9060--9107 23 2.0 22 84 11 60 39 0 0 60 0.97
9094--9168 17 4.8 16 77 14 84 54 0 5 40 1.23
9097--9184 29 3.0 29 89 3 122 56 0 5 37 1.23
9099--9184 46 1.9 45 88 9 131 56 0 5 37 1.23
10119--10144 13 2.0 13 100 0 52 38 7 0 53 1.30
30032--30108 23 3.2 23 62 16 57 38 22 3 35 1.72
30019--30116 49 2.0 49 100 0 196 38 18 6 36 1.76
32946--32995 14 4.0 14 71 28 58 24 20 6 50 1.70
32944--32988 22 2.0 22 100 0 90 26 17 4 51 1.65
33586--33627 21 2.0 21 100 0 84 38 9 23 28 1.86
51826--51861 17 2.1 17 100 0 72 47 5 0 47 1.25
57967--57994 14 2.0 14 100 0 56 42 7 28 21 1.79
59213--59305 18 5.2 18 97 0 177 44 10 22 22 1.84
60637--60667 15 2.1 15 93 0 53 29 16 0 54 1.42
61994--62037 21 2.1 21 100 0 88 40 13 15 29 1.86
69663--69703 21 2.0 21 100 0 82 29 24 9 36 1.87
73200--73224 13 1.9 13 100 0 50 12 8 0 80 0.92
76751--76781 12 2.7 12 95 5 55 54 16 6 22 1.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90533--90587 24 2.5 22 85 8 67 14 23 12 49 1.78
90533--90615 21 3.8 22 77 9 80 13 24 10 51 1.72
92977--93016 18 2.2 18 95 0 71 32 7 25 35 1.84
112079--112114 18 2.0 18 100 0 72 22 33 5 38 1.77
128196--128252 15 4.0 15 72 19 50 0 24 5 70 1.08
147872--147911 18 2.2 18 95 0 71 35 25 7 32 1.84
150284--150337 21 2.6 21 82 11 74 59 11 20 9 1.59
150273--150355 21 3.8 22 76 9 71 51 10 24 13 1.72
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Tables: 1
The End!