NC_065200.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065200.1 Momordica cochinchinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158955
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7048--7102 18 3.1 18 100 0 110 29 32 0 38 1.58
9252--9324 14 4.9 15 82 11 96 41 8 0 50 1.32
9252--9324 30 2.4 30 100 0 146 41 8 0 50 1.32
10777--10811 17 2.1 17 94 0 61 37 0 0 62 0.95
30253--30288 17 2.1 17 89 0 54 44 2 13 38 1.59
32802--32843 17 2.4 18 84 8 59 23 11 2 61 1.42
34001--34043 21 2.0 21 100 0 86 37 0 18 44 1.50
34341--34368 14 2.0 14 100 0 56 35 7 7 50 1.57
34450--34488 15 2.5 16 95 4 71 33 12 0 53 1.39
34938--34967 15 2.0 15 93 0 51 56 6 23 13 1.60
34961--35005 20 2.2 21 92 4 74 40 11 4 44 1.60
39125--39180 15 3.7 15 76 4 51 60 0 1 37 1.07
49897--49924 13 2.2 13 100 0 56 39 0 0 60 0.97
49885--49924 11 3.5 11 83 12 53 35 2 0 62 1.09
59882--59919 19 2.0 19 100 0 76 31 10 31 26 1.90
60734--60842 36 3.0 36 90 0 173 54 11 2 31 1.51
62837--62870 12 3.0 12 91 8 54 61 8 0 29 1.26
66319--66362 21 2.1 21 95 0 79 47 4 9 38 1.56
68968--69011 17 2.6 17 92 3 72 40 0 6 52 1.28
68979--69015 17 2.2 17 95 0 65 45 0 5 48 1.25
69012--69064 21 2.6 20 80 11 54 47 0 5 47 1.26
87617--87652 16 2.2 16 100 0 72 50 0 0 50 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92675--92757 21 3.7 23 75 18 77 13 22 9 54 1.68
92697--92764 21 3.2 21 82 0 82 11 22 7 58 1.57
95114--95170 18 3.2 18 94 0 105 31 5 28 35 1.79
95114--95170 9 6.3 9 72 0 51 31 5 28 35 1.79
111348--111413 32 2.1 32 97 0 123 40 24 9 25 1.84
117311--117365 25 2.1 27 83 16 71 45 0 0 54 0.99
135468--135533 32 2.1 32 97 0 123 25 9 24 40 1.84
151711--151767 18 3.2 18 94 0 105 35 28 5 31 1.79
151711--151767 9 6.3 9 72 0 51 35 28 5 31 1.79
154118--154206 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!