NC_065246.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_065246.1 Cassia fistula chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 161724 Tables: 1 2 This is table 1 of 2 ( 123 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 4399--4429 13 2.4 13 100 0 62 77 6 0 16 0.97 4663--4712 19 2.5 21 83 12 77 20 6 0 74 1.03 5190--5253 22 2.8 22 90 4 92 56 6 3 34 1.40 6993--7041 9 5.8 9 86 13 77 36 0 0 63 0.95 6996--7060 16 3.8 17 87 8 87 41 0 0 58 0.98 7035--7092 2 32.0 2 74 19 56 51 0 0 48 1.00 7035--7092 29 2.0 29 86 0 80 51 0 0 48 1.00 6998--7120 17 7.2 17 76 12 60 42 0 1 55 1.15 7178--7222 15 2.9 15 90 6 63 51 2 4 42 1.34 7236--7274 17 2.3 17 90 0 60 46 5 5 43 1.48 7243--7276 17 2.0 17 100 0 68 41 5 5 47 1.52 7264--7306 13 3.3 13 73 0 50 46 0 4 48 1.22 7318--7390 25 2.9 26 75 15 66 26 5 1 67 1.21 7382--7419 19 2.0 19 100 0 76 47 0 0 52 1.00 7371--7439 26 2.4 29 81 15 74 47 0 0 52 1.00 7386--7431 10 4.6 10 81 8 58 52 0 0 47 1.00 8036--8080 18 2.5 18 96 0 81 44 0 0 55 0.99 9166--9194 13 2.2 13 100 0 58 79 13 6 0 0.93 9389--9441 20 2.8 19 83 11 56 30 9 0 60 1.28 9433--9474 21 2.0 21 100 0 84 38 0 9 52 1.34 9540--9595 27 2.1 27 100 0 112 25 7 3 64 1.35 9541--9607 27 2.6 26 88 6 75 28 5 2 62 1.33 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9692--9734 14 3.1 14 100 0 86 58 0 6 34 1.25 11100--11130 12 2.5 12 94 5 53 41 0 0 58 0.98 11097--11158 21 2.7 22 80 11 63 43 0 0 56 0.99 11126--11155 15 2.0 15 100 0 60 46 0 0 53 1.00 11208--11243 18 2.0 18 100 0 72 27 5 5 61 1.41 11799--11850 24 2.5 19 73 26 59 40 3 3 51 1.38 11806--11853 24 2.0 24 100 0 96 37 4 4 54 1.39 31543--31577 18 2.1 16 89 10 52 28 5 28 37 1.80 31975--32008 12 2.8 12 86 0 50 14 0 8 76 1.01 34958--34988 16 1.9 16 100 0 62 51 6 9 32 1.60 40150--40175 13 2.0 13 100 0 52 53 0 0 46 1.00 40180--40206 14 1.9 14 100 0 54 18 7 0 74 1.05 40185--40230 23 2.1 24 84 15 64 28 4 0 67 1.10 40185--40231 20 2.3 21 79 17 55 29 4 0 65 1.11 40207--40257 23 2.0 24 82 14 59 39 3 0 56 1.18 40296--40336 17 2.3 19 87 8 59 39 9 9 41 1.71 40386--40423 19 2.0 19 100 0 76 47 5 0 47 1.24 40429--40465 15 2.4 16 95 4 67 48 2 5 43 1.40 40554--40600 12 3.8 12 79 20 60 40 4 8 46 1.54 40552--40602 26 2.0 26 100 0 102 43 3 7 45 1.51 40552--40595 14 3.3 14 78 9 56 40 4 6 47 1.50 40578--40681 20 5.2 20 69 22 74 44 1 9 44 1.48 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40551--40657 26 3.8 26 72 20 81 43 2 9 43 1.51 40878--40908 15 2.1 15 100 0 62 25 0 6 67 1.14 46322--46346 12 2.1 12 100 0 50 24 28 0 48 1.52 46676--46702 12 2.2 12 100 0 54 33 0 14 51 1.43 46910--46955 19 2.5 19 93 6 78 52 19 0 28 1.47 46927--46968 14 3.1 14 90 6 61 59 14 0 26 1.35 46931--46974 12 3.5 12 87 6 52 61 11 0 27 1.30 50954--50990 18 2.1 18 94 0 65 43 5 2 48 1.40 50942--51023 26 3.1 27 81 6 80 46 3 1 48 1.27 50978--51024 19 2.4 19 92 3 76 48 0 0 51 1.00 51154--51217 26 2.3 28 79 12 71 48 1 3 46 1.27 51171--51252 34 2.5 34 84 11 109 48 1 3 46 1.27 51201--51286 22 3.7 22 78 10 91 52 1 6 39 1.36 51232--51271 9 4.8 9 79 17 50 55 0 10 35 1.34 51240--51270 15 2.1 15 100 0 62 54 0 12 32 1.38 51261--51303 15 2.6 17 79 20 56 53 0 11 34 1.37 51442--51482 16 2.6 16 92 0 64 56 0 7 36 1.27 51447--51519 19 3.9 20 77 15 75 53 0 10 35 1.36 51566--51595 15 2.0 15 100 0 60 33 13 20 33 1.91 51674--51718 15 3.3 15 71 28 55 20 4 13 62 1.48 51669--51718 25 2.0 25 100 0 100 20 4 12 64 1.43 56148--56194 16 2.8 17 80 6 51 31 6 0 61 1.21 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 56331--56377 19 2.7 18 87 9 62 59 2 2 36 1.21 56408--56451 22 2.0 22 100 0 88 22 4 4 68 1.27 56446--56480 18 1.9 18 88 0 52 54 0 11 34 1.37 56481--56530 23 2.2 23 92 3 84 16 12 2 70 1.26 56647--56695 16 3.2 16 88 8 75 38 6 2 53 1.38 56656--56700 14 3.1 14 90 6 63 42 6 4 46 1.50 56676--56727 17 3.1 16 75 10 50 48 1 7 42 1.43 62151--62204 19 2.8 19 83 10 65 29 1 3 64 1.21 62172--62228 28 2.0 28 83 10 71 33 3 0 63 1.12 62183--62242 14 4.1 14 78 19 61 33 3 0 63 1.11 62269--62294 13 2.0 13 100 0 52 30 7 0 61 1.24 62412--62441 15 2.0 15 100 0 60 40 13 6 40 1.71 64664--64722 22 2.7 21 80 12 66 47 0 6 45 1.29 64772--64836 25 2.7 24 79 11 69 23 6 1 69 1.20 64810--64859 17 2.9 18 88 8 70 26 6 0 68 1.13 64947--64984 18 2.1 19 90 5 60 36 10 0 52 1.36 69025--69054 15 1.9 16 93 6 53 73 0 6 20 1.05 69070--69158 21 4.2 21 76 16 69 52 3 3 40 1.34 73228--73273 23 2.0 23 86 0 65 50 13 2 34 1.53 73983--74021 21 1.9 21 89 5 62 30 23 10 35 1.88 74893--74937 19 2.4 19 85 7 56 42 4 15 37 1.67 74975--75010 18 2.0 18 88 0 54 36 11 5 47 1.63 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 75872--75908 18 2.1 18 100 0 74 40 5 10 43 1.63 78090--78125 18 2.0 18 94 0 63 19 13 0 66 1.24 83209--83252 22 2.0 22 100 0 88 31 9 13 45 1.75 85670--85698 15 1.9 15 100 0 58 44 6 0 48 1.29 86972--86997 12 2.2 12 100 0 52 42 7 0 50 1.31 87132--87226 17 5.8 17 72 22 78 60 1 1 37 1.11 87118--87228 30 3.7 29 76 10 91 60 0 2 36 1.17 87172--87224 27 1.9 28 85 11 74 64 1 1 32 1.15 87172--87237 27 2.4 26 80 14 71 65 3 1 30 1.17 87281--87327 22 2.1 22 100 0 94 46 0 8 44 1.33 90819--90853 18 2.0 17 88 5 52 31 2 8 57 1.44 95976--96043 21 3.2 21 82 0 82 11 22 7 58 1.57 98387--98434 9 5.3 9 82 0 60 33 6 25 35 1.81 98394--98434 18 2.3 18 95 0 73 34 7 26 31 1.84 106588--106634 23 2.0 24 87 4 69 23 10 6 59 1.53 117067--117127 18 3.5 17 80 10 52 55 4 3 36 1.38 117095--117129 17 2.1 17 100 0 70 54 5 0 40 1.24 117200--117274 18 4.1 18 75 11 53 42 1 2 53 1.23 117206--117262 25 2.3 25 93 0 96 43 1 0 54 1.10 120276--120305 15 2.0 15 100 0 60 66 6 6 20 1.38 125864--125912 19 2.6 19 87 6 64 24 6 6 63 1.41 125930--125969 15 2.6 16 88 8 64 57 0 0 42 0.98 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 127562--127631 32 2.4 29 78 19 83 20 4 1 74 1.07 128182--128215 17 2.0 17 100 0 68 29 11 0 58 1.33 128180--128249 27 2.5 28 74 23 76 37 7 0 55 1.27 128202--128244 13 3.2 14 90 9 72 41 4 0 53 1.21 128429--128461 16 2.1 16 94 0 57 72 3 18 6 1.18 131533--131568 18 2.0 18 89 10 56 22 11 5 61 1.50 131977--132016 18 2.2 18 86 0 53 15 12 7 65 1.47 146135--146181 23 2.0 24 87 4 69 59 6 10 23 1.53 146688--146725 12 2.8 13 88 11 51 73 0 7 18 1.06 154335--154375 18 2.3 18 95 0 73 31 26 7 34 1.84 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2