NC_065473.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065473.1 Strychnos nux-vomica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156027
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6679--6716 19 2.1 18 95 5 67 42 5 7 44 1.56
10376--10405 14 2.1 14 100 0 60 50 20 0 30 1.49
17020--17052 17 2.0 16 94 5 57 18 15 0 66 1.25
21591--21629 20 1.9 21 84 5 53 41 17 7 33 1.79
27681--27720 20 2.0 21 85 5 55 32 2 12 52 1.52
28954--28989 15 2.4 15 90 0 54 36 16 2 44 1.63
32926--32971 16 3.0 16 87 9 69 39 10 4 45 1.59
33949--33988 18 2.3 18 91 4 64 45 2 10 42 1.51
43710--43756 23 2.0 23 100 0 94 42 25 0 31 1.55
46399--46429 15 2.1 15 93 0 53 61 3 19 16 1.48
49492--49525 17 2.0 17 100 0 68 29 17 5 47 1.71
52474--52502 12 2.3 13 94 5 51 68 6 6 17 1.34
52529--52559 13 2.4 13 100 0 62 45 0 0 54 0.99
52535--52579 13 3.1 16 85 14 55 53 0 0 46 1.00
52555--52630 8 10.7 7 73 18 52 55 1 0 43 1.08
52527--52592 8 8.4 8 76 20 68 51 0 0 48 1.00
52634--52687 12 4.8 12 78 15 62 25 0 7 66 1.17
68135--68163 15 1.9 15 100 0 58 62 3 13 20 1.46
70735--70775 21 2.0 21 95 0 73 29 26 9 34 1.88
76721--76746 13 2.0 13 100 0 52 23 7 30 38 1.83
82025--82073 24 2.0 24 84 0 62 26 30 14 28 1.95
91577--91631 24 2.5 22 85 8 67 14 23 12 49 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91599--91666 21 3.2 21 77 8 75 11 22 8 57 1.61
94012--94051 18 2.2 18 95 0 71 32 7 25 35 1.84
113871--113912 20 2.0 20 82 13 50 54 21 2 21 1.56
122672--122704 14 2.4 14 100 0 66 54 6 15 24 1.63
125072--125114 21 2.0 21 100 0 86 13 18 18 48 1.80
125694--125729 18 2.0 18 94 0 63 55 19 8 16 1.66
129115--129169 15 3.7 15 78 9 60 0 18 9 72 1.10
129103--129164 28 2.2 29 80 13 76 0 17 9 72 1.10
148719--148758 18 2.2 18 95 0 71 35 25 7 32 1.84
151104--151193 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!