NC_066002.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066002.1 Crataegus monogyna isolate BPTPS005 voucher LISE:96340 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159801
Tables: 1
This is table 1 of 1 ( 84 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1599--1631 16 2.1 16 100 0 66 33 6 6 54 1.50
5069--5097 15 1.9 15 100 0 58 55 6 0 37 1.27
5575--5620 23 2.0 23 100 0 92 52 8 8 30 1.62
6592--6634 20 2.2 20 100 0 86 55 9 4 30 1.52
7122--7171 15 3.4 15 77 2 57 32 0 8 60 1.26
7178--7210 16 2.1 16 94 0 57 51 3 6 39 1.42
8715--8745 15 2.1 15 93 0 53 51 9 12 25 1.70
10228--10258 16 1.9 16 100 0 62 48 6 0 45 1.28
10328--10396 24 2.6 25 77 15 68 43 1 8 46 1.43
10406--10437 16 2.0 16 100 0 64 50 6 0 43 1.27
10407--10446 16 2.4 16 91 4 62 52 5 0 42 1.23
13705--13738 17 2.0 17 100 0 68 41 11 17 29 1.85
21673--21702 15 2.0 15 93 0 51 36 13 16 33 1.88
21678--21707 15 2.0 15 93 0 51 33 13 23 30 1.93
28212--28238 13 2.1 13 100 0 54 40 0 22 37 1.54
30869--30917 20 2.5 20 96 0 89 44 12 0 42 1.41
33444--33472 14 2.1 14 100 0 58 20 31 6 41 1.79
33642--33677 9 3.8 10 92 7 58 50 0 0 50 1.00
33642--33679 19 2.1 18 90 5 58 47 0 0 52 1.00
34082--34252 17 9.7 17 73 21 104 58 0 0 41 0.98
34074--34213 20 7.7 19 74 24 108 59 0 0 40 0.97
34080--34225 54 2.8 53 76 16 144 60 0 0 39 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
34098--34204 37 3.1 34 84 13 139 61 0 0 38 0.96
34080--34225 34 4.1 35 83 12 158 60 0 0 39 0.97
34206--34258 26 2.0 26 100 0 106 52 0 0 47 1.00
34208--34256 12 3.9 12 89 10 80 53 0 0 46 1.00
38856--38955 18 5.4 18 77 13 105 38 0 6 56 1.24
38881--38927 13 4.0 13 74 25 59 29 0 6 63 1.19
38864--38927 21 3.2 20 87 8 87 32 0 4 62 1.16
38882--38927 7 6.7 7 76 14 51 30 0 4 65 1.12
38915--38995 22 3.6 23 75 20 82 38 0 9 51 1.35
38880--38998 21 5.5 22 76 19 81 35 0 8 56 1.30
38856--38997 74 1.9 74 83 12 184 36 0 7 55 1.29
39011--39048 15 2.5 15 95 0 67 60 5 0 34 1.19
39071--39109 12 3.2 12 92 3 60 30 0 0 69 0.89
48929--48982 20 2.8 20 91 8 87 44 0 7 48 1.31
49469--49503 18 2.0 18 88 5 54 40 8 11 40 1.72
49639--49678 11 3.7 11 86 6 64 30 12 0 57 1.36
49630--49679 21 2.4 21 96 0 91 28 12 0 60 1.32
49765--49842 29 2.6 29 85 8 93 34 6 2 56 1.39
49757--49817 29 2.1 29 100 0 122 29 11 3 55 1.51
49997--50044 24 2.0 24 100 0 96 25 0 12 62 1.30
52839--52870 16 2.0 16 100 0 64 18 12 12 56 1.67
54321--54350 16 1.9 15 93 6 51 40 6 0 53 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54323--54383 13 4.6 14 71 17 58 40 4 1 52 1.33
54462--54518 2 28.0 2 82 3 60 56 3 0 40 1.17
54462--54525 8 8.5 8 75 17 57 57 3 0 39 1.14
54475--54525 12 4.5 12 88 11 81 60 0 0 39 0.97
54478--54525 22 2.2 21 96 3 87 62 0 0 37 0.95
54463--54531 14 4.7 14 78 8 50 56 4 1 37 1.28
54529--54565 13 3.0 13 84 7 51 13 10 0 75 1.04
57989--58018 14 2.1 14 93 0 51 20 13 10 56 1.65
59843--59867 12 2.1 12 100 0 50 60 0 8 32 1.26
61910--61944 17 2.1 17 94 0 61 45 2 11 40 1.55
66777--66807 16 1.9 16 100 0 62 41 0 6 51 1.27
68862--68897 18 2.1 17 94 5 63 38 5 8 47 1.57
69781--69824 22 2.0 22 100 0 88 54 9 4 31 1.52
70605--70641 19 2.0 18 94 5 65 0 10 2 86 0.67
71425--71463 21 1.9 21 89 5 62 33 20 10 35 1.86
73339--73365 13 2.1 13 100 0 54 66 0 14 18 1.25
77920--77955 18 2.0 18 94 0 63 41 5 11 41 1.64
85953--85997 22 2.0 22 95 0 81 35 22 6 35 1.80
88526--88565 20 2.0 20 95 0 71 37 10 2 50 1.50
92730--92797 21 3.2 21 82 0 82 11 22 7 58 1.57
95152--95203 18 2.9 18 94 0 95 32 7 28 30 1.85
98156--98217 21 3.0 21 97 2 117 53 4 0 41 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102664--102702 15 2.9 14 88 11 55 17 10 0 71 1.12
102706--102743 12 3.2 12 100 0 76 7 7 0 84 0.79
102687--102743 24 2.4 24 85 2 71 8 10 0 80 0.90
111456--111519 31 2.1 31 93 0 110 37 26 9 26 1.87
114865--114895 12 2.7 12 95 5 55 25 16 0 58 1.38
117710--117770 20 3.0 20 100 0 122 55 0 14 29 1.40
125441--125465 12 2.1 12 100 0 50 48 8 0 44 1.32
125580--125622 21 2.0 21 100 0 86 48 13 0 37 1.43
132061--132094 15 2.3 15 89 0 50 0 23 5 70 1.09
136074--136137 31 2.1 31 93 0 110 26 9 26 37 1.87
144850--144887 12 3.2 12 100 0 76 84 0 7 7 0.79
144850--144906 23 2.4 24 82 8 64 80 0 10 8 0.90
144850--144906 24 2.4 23 85 2 69 80 0 10 8 0.90
144891--144929 15 2.9 14 88 11 55 71 0 10 17 1.12
149376--149437 21 3.0 21 97 2 117 41 0 4 53 1.22
152390--152441 18 2.9 18 94 0 95 30 28 7 32 1.85
154797--154885 21 4.1 21 81 5 81 56 7 23 12 1.62
159028--159067 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!