NC_066015.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066015.1 Aesculus hippocastanum isolate BPTPS062 voucher LISE:96389 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156100
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3695--3736 20 2.1 20 95 0 75 38 9 16 35 1.81
9116--9165 25 2.0 25 100 0 100 24 24 4 48 1.68
9912--9955 16 2.6 17 89 7 72 25 13 4 56 1.56
20850--20879 15 2.0 15 93 0 51 40 16 13 30 1.87
22898--22929 15 2.1 15 100 0 64 37 12 6 43 1.68
22926--22963 19 2.0 19 100 0 76 47 0 21 31 1.51
28543--28579 19 1.9 19 94 0 65 21 10 13 54 1.69
29042--29087 17 2.6 17 89 3 65 65 2 21 10 1.35
29198--29231 17 2.0 17 100 0 68 52 0 17 29 1.45
30810--30856 23 2.0 23 100 0 94 23 8 4 63 1.40
37071--37110 20 2.0 20 100 0 80 45 5 0 50 1.23
45639--45684 23 2.0 23 100 0 92 13 21 4 60 1.49
47217--47256 20 2.0 20 100 0 80 25 5 10 60 1.49
47816--47856 17 2.5 17 96 4 75 46 4 0 48 1.23
47935--47977 15 2.9 15 92 0 68 41 20 13 23 1.88
48667--48692 13 2.0 13 100 0 52 30 7 23 38 1.83
49604--49638 17 2.1 17 100 0 70 40 17 14 28 1.88
56454--56483 10 3.0 10 100 0 60 30 20 20 30 1.97
64735--64760 13 2.0 13 100 0 52 23 15 7 53 1.67
66435--66466 16 2.0 16 100 0 64 37 6 6 50 1.53
69376--69414 21 1.9 21 94 5 71 30 25 10 33 1.89
85640--85675 18 2.0 18 100 0 72 16 11 22 50 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90462--90513 21 2.5 21 93 0 86 7 23 11 57 1.59
92890--92961 18 4.2 18 92 5 105 30 8 25 36 1.85
105292--105366 38 2.0 37 94 2 132 33 22 24 20 1.97
115335--115399 14 4.9 14 78 12 66 10 18 0 70 1.15
115335--115399 26 2.4 27 87 7 89 10 18 0 70 1.15
115499--115530 16 2.0 16 93 0 55 25 15 6 53 1.65
123134--123188 26 2.1 26 100 0 110 50 7 10 30 1.64
136413--136487 38 2.0 37 94 2 132 20 24 22 33 1.97
148818--148877 18 3.3 18 97 0 111 33 26 10 30 1.89
148818--148889 18 4.2 17 92 5 85 36 25 8 30 1.85
151266--151319 21 2.6 21 90 0 90 59 11 22 7 1.56
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Tables: 1
The End!