NC_066033.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066033.1 Melissa officinalis isolate BPTPS114 voucher LISE:96435 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152112
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7026--7077 24 2.2 24 86 10 72 42 11 9 36 1.74
28949--28987 15 2.6 15 91 0 60 43 0 23 33 1.54
31930--31958 15 1.9 15 100 0 58 58 6 13 20 1.58
41651--41709 6 9.2 6 73 26 50 30 3 3 62 1.28
41660--41705 14 3.4 14 77 22 62 32 2 4 60 1.28
41642--41709 26 2.6 26 95 2 118 29 2 5 61 1.34
41944--41978 17 2.1 17 88 0 52 48 0 0 51 1.00
58579--58610 16 2.0 16 93 0 55 25 21 15 37 1.93
58885--58927 17 2.6 16 81 3 50 51 9 2 37 1.47
62781--62814 17 2.0 17 100 0 68 29 29 11 29 1.92
88015--88069 24 2.5 22 85 8 67 14 23 12 49 1.78
88037--88104 21 3.2 21 77 8 75 11 22 10 55 1.65
90421--90510 18 5.2 18 92 4 132 32 7 24 35 1.84
90433--90509 9 8.6 9 69 0 55 32 9 25 32 1.87
98238--98287 11 4.5 11 82 12 59 32 2 18 48 1.59
98243--98294 17 3.1 16 82 15 61 30 1 21 46 1.62
106220--106280 31 2.0 31 93 0 104 40 21 9 27 1.85
110447--110485 20 2.0 20 85 10 53 56 23 0 20 1.42
118590--118614 12 2.1 12 100 0 50 8 0 32 60 1.26
124021--124060 20 2.0 20 85 9 55 7 12 5 75 1.18
125172--125219 14 3.6 14 80 5 55 0 14 6 79 0.92
125165--125207 14 3.1 14 83 3 52 0 18 2 79 0.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
125165--125219 27 2.1 26 83 10 67 0 16 5 78 0.93
129049--129109 31 2.0 31 93 0 104 27 9 21 40 1.85
137035--137069 17 2.0 18 94 5 63 48 22 0 28 1.51
137073--137118 23 2.0 23 86 0 65 60 6 6 26 1.46
144819--144896 9 8.7 9 68 0 57 33 25 8 32 1.87
144819--144908 18 5.2 18 92 4 132 35 24 7 32 1.84
147243--147296 21 2.6 21 82 11 74 59 11 20 9 1.59
147225--147314 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!