NC_066036.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066036.1 Stevia rebaudiana isolate BPTPS142 voucher LISE:96453 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151679
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13553--13579 1 27.0 1 100 0 54 100 0 0 0 0.00
15655--15694 19 2.1 19 100 0 80 55 20 5 20 1.62
16091--16131 21 2.0 21 95 0 73 34 9 24 31 1.88
19155--19180 13 2.0 13 100 0 52 46 0 15 38 1.46
24635--24662 12 2.3 12 100 0 56 35 7 0 57 1.26
24741--24776 18 2.0 18 100 0 72 33 11 16 38 1.84
24895--24924 15 2.0 15 93 0 51 26 10 6 56 1.57
31787--31816 15 2.0 15 100 0 60 33 13 13 40 1.83
35329--35376 23 2.1 23 96 0 87 41 8 12 37 1.73
35663--35705 18 2.4 17 82 17 52 34 13 13 37 1.85
36633--36663 1 31.0 1 100 0 62 100 0 0 0 0.00
36829--36873 22 2.0 23 82 4 56 44 13 15 26 1.83
39075--39103 15 1.9 15 100 0 58 34 0 13 51 1.42
41220--41261 22 2.0 20 86 13 57 23 0 9 66 1.21
52912--52955 22 2.0 22 90 0 70 20 6 20 52 1.69
53273--53304 1 32.0 1 100 0 64 0 0 0 100 0.00
55091--55117 1 27.0 1 100 0 54 100 0 0 0 0.00
60031--60064 17 2.0 17 88 0 50 70 0 17 11 1.16
70675--70700 12 2.2 12 100 0 52 19 15 7 57 1.62
71657--71690 16 2.1 17 88 5 52 61 8 14 14 1.55
83236--83309 5 17.2 4 77 22 55 22 4 6 66 1.33
83236--83310 21 3.5 21 96 3 132 24 4 6 65 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106357--106418 32 1.9 32 93 0 106 41 22 8 27 1.82
111840--111869 12 2.6 12 94 5 53 50 6 6 36 1.55
118850--118878 14 2.1 14 100 0 58 51 13 6 27 1.66
118899--118938 19 2.1 19 95 0 71 40 22 5 32 1.76
119333--119390 19 3.3 19 68 26 63 51 5 12 31 1.61
122032--122070 19 2.1 19 100 0 78 25 15 20 38 1.92
123222--123261 21 1.9 21 100 0 80 42 35 2 20 1.65
126490--126521 15 2.1 15 100 0 64 6 28 6 59 1.46
128722--128783 32 1.9 32 93 0 106 27 8 22 41 1.82
137290--137338 23 2.1 24 85 11 66 63 4 10 22 1.43
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Tables: 1
The End!