NC_066115.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066115.1 Corydalis decumbens voucher 170001 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 176847
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5386--5416 10 3.2 10 95 4 55 29 9 9 51 1.66
7019--7048 15 2.0 15 100 0 60 20 20 33 26 1.97
7021--7054 15 2.3 15 89 0 50 29 14 29 26 1.95
10438--10475 12 3.2 12 100 0 76 7 65 7 18 1.43
10462--10703 111 2.2 113 88 6 377 20 28 24 26 1.99
10687--10724 12 3.2 12 100 0 76 7 65 7 18 1.43
10580--10842 138 1.9 136 91 6 433 19 31 23 25 1.98
10421--10949 249 2.1 249 96 0 988 19 29 24 26 1.98
10715--10972 111 2.3 113 91 4 425 19 27 26 26 1.99
11814--12311 177 3.0 159 84 10 674 19 28 22 30 1.98
12119--12154 18 2.0 18 94 0 63 5 50 13 30 1.65
11960--12404 177 2.5 177 95 1 795 18 29 22 30 1.97
12296--12331 18 2.0 18 94 0 63 5 50 13 30 1.65
12932--13154 81 2.8 81 99 0 437 22 23 18 34 1.96
13188--13229 21 2.0 21 90 0 66 9 21 11 57 1.63
13741--13789 15 3.3 15 72 11 55 40 2 12 44 1.53
13908--14074 83 2.0 83 100 0 334 26 31 13 29 1.94
35336--35369 15 2.3 15 89 0 50 29 8 32 29 1.87
69225--69306 42 1.9 43 85 2 112 32 28 13 25 1.93
69549--69579 15 2.1 15 100 0 62 67 0 25 6 1.14
71728--71811 42 2.0 42 97 0 159 16 17 28 36 1.92
72084--72195 54 2.1 54 93 0 188 39 25 19 16 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
78479--78517 20 2.0 20 90 5 62 28 28 20 23 1.99
84958--84994 18 2.1 18 100 0 74 32 10 5 51 1.60
92282--92642 21 16.6 21 83 10 302 23 21 17 38 1.93
92690--92825 66 2.1 66 81 5 159 15 23 16 44 1.85
92690--92825 21 6.2 21 70 13 103 15 23 16 44 1.85
92768--92853 30 3.1 29 84 15 112 10 24 12 52 1.71
95094--95162 30 2.3 30 87 7 95 31 8 33 26 1.87
96437--96467 15 2.1 15 100 0 62 41 6 32 19 1.77
99177--99533 113 3.0 117 92 7 596 22 19 29 28 1.98
113243--113267 12 2.1 12 100 0 50 20 40 16 24 1.91
125440--125550 57 1.9 57 96 0 204 34 10 14 40 1.81
127195--127326 12 11.0 12 99 0 255 59 0 32 8 1.27
130361--130423 30 2.1 30 100 0 126 44 23 15 15 1.86
130734--130862 24 5.4 24 73 7 109 31 26 17 24 1.97
130734--130827 48 2.0 48 84 0 125 30 24 20 24 1.98
132440--132643 102 2.0 102 93 1 347 35 22 16 25 1.94
148274--148433 89 1.8 87 84 10 220 37 13 16 33 1.87
152371--152395 12 2.1 12 100 0 50 24 16 40 20 1.91
166105--166461 113 3.0 118 92 7 607 28 29 19 22 1.98
169171--169201 15 2.1 15 100 0 62 19 32 6 41 1.77
172785--172870 30 3.1 29 81 18 112 52 12 24 10 1.71
172813--172948 21 6.2 21 72 13 103 44 16 23 15 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
172996--173356 21 16.6 21 83 10 302 38 17 21 23 1.93
173235--173331 27 3.8 26 72 25 84 38 15 22 23 1.92
173255--173368 54 2.1 54 79 9 126 36 15 22 24 1.94
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Tables: 1
The End!