NC_066436.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066436.1 Piper retrofractum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161346
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1951--1985 18 1.9 18 100 0 70 28 8 22 40 1.84
5271--5306 18 2.0 18 100 0 72 27 11 16 44 1.82
6452--6477 13 2.0 13 100 0 52 23 15 7 53 1.67
12237--12269 16 2.1 16 100 0 66 39 18 0 42 1.50
12303--12341 20 2.0 19 90 5 60 2 0 12 84 0.72
12303--12341 15 2.7 14 84 7 51 2 0 12 84 0.72
34484--34543 27 2.3 25 83 11 68 43 5 8 43 1.56
37555--37579 12 2.1 12 100 0 50 24 8 0 68 1.16
49222--49270 24 2.3 21 83 16 57 44 8 8 38 1.64
49216--49263 24 2.0 24 100 0 96 45 8 8 37 1.64
52278--52308 15 2.1 15 93 0 53 38 12 22 25 1.90
53751--53779 13 2.2 13 100 0 58 37 0 13 48 1.43
60398--60452 17 3.5 17 76 23 75 52 0 3 43 1.18
60404--60455 12 3.9 13 77 18 54 53 0 5 40 1.25
60428--60535 54 2.0 54 100 0 216 44 3 12 38 1.61
60735--60776 21 2.0 21 100 0 84 33 28 4 33 1.78
60739--60789 21 2.5 21 87 3 68 35 25 1 37 1.67
64933--64963 16 1.9 16 100 0 62 32 0 16 51 1.44
65106--65147 14 3.0 14 86 10 59 40 7 0 52 1.29
65104--65150 14 3.6 14 81 18 57 38 8 0 53 1.32
69495--69529 17 2.1 17 100 0 70 31 17 0 51 1.45
79718--79742 12 2.1 12 100 0 50 44 8 8 40 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
79789--79830 17 2.5 17 88 7 59 69 2 4 23 1.20
79788--79830 16 2.5 18 81 11 54 69 2 4 23 1.18
87035--87072 20 1.9 20 100 0 76 34 7 10 47 1.67
91465--91495 15 2.1 15 100 0 62 19 32 0 48 1.49
93737--93820 24 3.6 24 87 9 138 14 22 11 51 1.75
93737--93828 45 2.1 45 93 2 159 13 23 10 52 1.71
96215--96292 15 4.7 17 70 15 65 34 7 24 33 1.84
96211--96286 24 3.2 24 98 0 143 35 7 22 34 1.83
104002--104060 6 10.8 6 81 17 51 30 16 0 52 1.44
104056--104088 16 2.1 16 94 0 57 27 15 0 57 1.38
104977--105013 14 2.6 14 95 0 65 32 13 0 54 1.40
117676--117700 12 2.1 12 100 0 50 68 0 8 24 1.16
125765--125807 22 2.0 22 85 0 59 18 20 4 55 1.60
129726--129779 27 2.0 27 100 0 108 51 7 18 22 1.70
131976--132006 14 2.2 14 100 0 62 22 6 0 70 1.09
145261--145297 14 2.6 14 95 0 65 54 0 13 32 1.40
146186--146218 16 2.1 16 94 0 57 57 0 15 27 1.38
146214--146272 6 10.8 6 81 17 51 52 0 16 30 1.44
146159--146262 34 3.2 33 76 12 85 55 0 15 28 1.40
153988--154063 24 3.2 24 98 0 143 34 22 7 35 1.83
156454--156537 24 3.6 24 87 9 138 51 11 22 14 1.75
156446--156537 45 2.1 44 93 2 157 52 10 23 13 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158779--158809 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!