NC_066967.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066967.1 Cordia dichotoma chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151990
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13848--13879 16 2.0 16 100 0 64 18 25 6 50 1.70
14533--14565 17 1.9 17 100 0 66 48 3 6 42 1.43
28805--28830 13 2.0 13 100 0 52 30 0 7 61 1.24
33346--33385 21 1.9 22 85 10 57 82 0 7 10 0.84
43975--44020 23 2.0 23 95 0 83 36 21 10 30 1.88
47486--47510 12 2.1 12 100 0 50 24 16 0 60 1.36
55168--55220 24 2.2 24 80 12 65 79 1 11 7 1.01
58185--58225 21 2.0 21 95 0 73 51 4 19 24 1.66
58697--58839 39 3.7 39 95 0 241 38 14 27 19 1.91
59119--59210 33 2.8 33 73 15 100 33 14 26 26 1.94
66541--66574 18 1.9 18 88 5 52 64 5 8 20 1.43
69107--69161 21 2.6 21 100 0 110 32 30 10 25 1.90
83099--83148 24 2.1 24 100 0 100 34 20 4 42 1.70
85945--86019 36 2.1 36 100 0 150 40 10 8 41 1.69
88199--88385 21 9.4 19 71 21 93 11 22 11 54 1.69
88199--88383 96 1.9 96 92 0 307 11 22 11 53 1.70
88298--88386 21 4.2 21 83 8 110 12 21 12 53 1.70
90565--90672 18 6.0 18 93 0 162 25 18 26 28 1.98
91914--92169 36 6.0 44 77 16 156 31 7 33 26 1.85
92020--92187 18 8.8 18 86 11 237 33 4 36 24 1.77
91987--92169 36 4.4 45 85 10 159 33 5 34 26 1.80
106687--106752 32 2.1 32 91 0 105 42 21 9 27 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110706--110747 20 2.0 21 86 13 61 54 21 0 23 1.44
129231--129296 32 2.1 32 91 0 105 27 9 21 42 1.83
143796--143963 18 8.8 18 86 11 237 24 36 4 33 1.77
143886--144010 45 2.7 45 86 6 162 28 33 5 32 1.80
145311--145418 18 6.0 18 93 0 162 28 26 18 25 1.98
147608--147685 21 3.8 21 86 5 97 50 14 21 14 1.78
147597--147781 42 4.6 40 68 22 120 54 11 22 11 1.69
147600--147784 96 1.9 96 92 0 307 53 11 22 11 1.70
147728--147781 21 2.6 21 93 0 90 51 12 20 14 1.75
149964--150038 36 2.1 36 100 0 150 41 8 10 40 1.69
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Tables: 1
The End!