NC_067611.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067611.1 Choerospondias axillaris chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159142
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8--59 16 3.2 16 94 0 95 53 1 5 38 1.36
13--79 26 2.6 26 75 13 66 53 2 2 40 1.31
746--772 14 1.9 14 100 0 54 66 14 3 14 1.38
4040--4092 21 2.6 20 94 5 97 28 13 22 35 1.92
11996--12023 14 2.0 14 100 0 56 64 0 0 35 0.94
12038--12079 14 2.8 16 89 10 63 28 7 0 64 1.20
14498--14527 14 2.1 14 100 0 60 46 13 0 40 1.43
16735--16765 14 2.2 14 94 0 53 16 3 12 67 1.35
31123--31185 24 2.6 25 79 2 65 28 6 0 65 1.17
32662--32695 16 2.1 16 100 0 68 5 23 11 58 1.55
35132--35170 19 2.1 19 100 0 78 48 0 15 35 1.45
35608--35637 15 2.0 15 100 0 60 20 13 13 53 1.72
39467--39496 15 2.0 15 100 0 60 33 13 13 40 1.83
40064--40131 18 3.9 18 85 14 99 58 0 0 41 0.98
40060--40154 30 3.2 30 76 20 94 58 0 0 41 0.98
40067--40139 9 8.3 9 76 21 75 58 0 0 41 0.98
40061--40157 15 6.3 15 80 15 85 58 0 0 41 0.98
40452--40487 18 2.0 18 100 0 72 44 16 11 27 1.82
50773--50797 12 2.1 12 100 0 50 52 8 8 32 1.60
51241--51298 15 3.9 15 97 0 107 46 20 12 20 1.82
52709--52738 15 2.0 15 100 0 60 46 13 13 26 1.80
52748--52780 17 1.9 17 100 0 66 42 18 3 36 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61494--61526 12 2.5 13 85 14 50 54 15 3 27 1.55
71130--71157 14 2.0 14 100 0 56 28 14 7 50 1.69
73120--73165 15 3.3 15 72 27 55 39 8 0 52 1.33
73112--73166 27 2.0 27 100 0 110 41 7 0 50 1.30
73280--73318 21 1.9 21 94 5 71 30 25 10 33 1.89
75132--75187 28 2.0 28 100 0 112 57 10 10 21 1.63
79568--79604 18 2.1 18 100 0 74 32 16 10 40 1.83
83179--83214 18 2.0 18 100 0 72 27 22 5 44 1.75
91774--91823 25 2.0 25 100 0 100 40 8 12 40 1.72
92061--92108 24 2.0 24 100 0 96 29 8 25 37 1.85
94462--94530 21 3.3 21 83 2 86 11 23 8 56 1.62
96816--96910 18 5.3 18 97 0 172 29 8 27 34 1.86
98415--98444 15 2.0 15 100 0 60 20 40 0 40 1.52
104752--104789 18 2.1 18 95 0 67 23 7 5 63 1.42
112880--112945 32 2.1 32 97 0 123 40 24 9 25 1.84
119200--119259 30 2.0 30 100 0 120 50 6 6 36 1.55
137516--137581 32 2.1 32 97 0 123 25 9 24 40 1.84
145672--145709 18 2.1 18 95 0 67 63 5 7 23 1.42
152017--152046 15 2.0 15 100 0 60 40 0 40 20 1.52
153551--153645 18 5.3 18 97 0 172 34 27 8 29 1.86
155948--156001 21 2.6 21 90 0 90 59 11 20 9 1.59
155931--155999 21 3.3 21 83 2 86 56 8 23 11 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158353--158400 24 2.0 24 100 0 96 37 25 8 29 1.85
158638--158687 25 2.0 25 100 0 100 40 12 8 40 1.72
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!