NC_067730.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067730.1 Saussurea costus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152704
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2012--2043 12 2.7 12 100 0 64 34 0 6 59 1.23
9176--9207 15 2.1 15 100 0 64 62 6 18 12 1.50
24809--24833 12 2.1 12 100 0 50 60 8 8 24 1.52
25212--25258 24 2.0 24 83 8 60 46 0 36 17 1.48
29538--29573 18 2.0 18 100 0 72 61 0 5 33 1.19
30822--30857 18 2.0 18 100 0 72 44 11 0 44 1.39
47120--47159 21 1.9 21 100 0 80 30 27 0 42 1.56
50136--50174 1 39.0 1 100 0 78 0 0 0 100 0.00
51705--51734 15 2.0 15 93 0 51 36 16 13 33 1.88
54455--54486 16 2.0 16 100 0 64 43 25 0 31 1.55
56168--56217 25 2.0 25 96 0 91 26 8 30 36 1.85
58781--58828 20 2.3 21 92 7 89 45 4 4 45 1.41
62734--62777 21 2.1 21 100 0 88 56 4 9 29 1.50
65347--65371 12 2.1 12 100 0 50 40 8 16 36 1.77
67622--67662 21 2.0 21 95 0 73 31 24 9 34 1.88
90140--90166 9 3.0 9 100 0 54 11 11 44 33 1.75
90908--91003 18 5.4 17 88 5 95 27 9 27 36 1.87
90908--91003 36 2.7 36 83 0 120 27 9 27 36 1.87
98077--98116 20 2.0 20 100 0 80 25 5 5 65 1.34
98067--98121 20 2.5 24 75 25 75 25 3 3 67 1.23
106797--106857 32 1.9 32 93 0 104 40 22 8 27 1.82
112696--112743 24 2.0 24 100 0 96 29 16 4 50 1.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
123736--123785 24 2.1 24 96 0 91 14 42 0 44 1.44
123958--123999 21 2.0 21 95 0 75 50 30 0 19 1.48
126709--126799 45 2.0 45 91 0 146 27 14 10 47 1.77
129514--129574 32 1.9 32 93 0 104 27 8 22 40 1.82
138251--138304 20 2.5 23 82 17 87 68 3 3 24 1.22
145368--145463 18 5.3 18 88 0 120 36 27 9 27 1.87
146205--146231 9 3.0 9 100 0 54 33 44 11 11 1.75
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Tables: 1
The End!