NC_067975.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067975.1 Valeriana jatamansi chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155138
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
16207--16232 13 2.0 13 100 0 52 38 7 15 38 1.76
30691--30739 14 3.3 15 78 15 57 53 4 2 40 1.32
30696--30729 17 2.0 17 94 0 59 52 5 2 38 1.41
30700--30745 23 2.0 23 83 8 58 54 2 4 39 1.32
45107--45162 24 2.3 25 78 9 71 62 14 8 14 1.54
47271--47323 15 3.5 15 82 7 63 41 5 5 47 1.51
53674--53698 13 1.9 13 100 0 50 36 0 0 64 0.94
56440--56537 33 3.0 33 98 0 187 39 18 22 19 1.92
56804--57468 36 18.1 36 81 13 763 26 19 26 27 1.99
56804--57437 111 5.7 111 98 0 1220 26 19 25 28 1.99
57498--57545 6 8.0 6 85 0 69 18 29 18 33 1.95
57463--57544 18 4.6 17 74 8 65 19 21 23 35 1.96
57541--57625 27 3.1 27 70 0 80 28 17 27 27 1.98
58305--58342 20 2.0 20 89 5 60 23 13 10 52 1.71
62832--62912 7 12.0 7 76 7 78 61 1 3 33 1.21
62818--62871 27 2.0 27 100 0 108 51 3 3 40 1.37
62853--62912 20 3.0 20 100 0 120 65 0 5 30 1.14
62832--62912 27 3.0 27 82 7 76 61 1 3 33 1.21
67587--67640 21 2.6 21 100 0 108 33 31 14 20 1.93
67836--67897 21 3.0 21 95 0 106 54 9 11 24 1.65
67880--68062 15 12.2 15 89 8 268 42 19 12 26 1.86
67881--68056 60 2.9 60 95 3 311 42 19 11 25 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81003--81043 17 2.4 17 88 8 57 12 21 4 60 1.50
81782--81806 13 1.9 13 100 0 50 20 16 0 64 1.30
87436--87501 21 3.1 21 100 0 132 54 13 27 4 1.58
88750--88806 21 2.7 21 76 10 71 12 12 10 64 1.49
90376--90467 24 3.8 24 98 0 166 35 20 15 28 1.93
90803--90882 18 4.4 18 95 0 133 20 5 53 21 1.64
91502--91530 6 4.8 6 100 0 58 17 31 0 51 1.45
91759--91812 15 3.6 15 89 0 72 37 3 33 25 1.74
93222--93349 21 6.1 21 100 0 256 42 4 24 28 1.74
100264--100321 19 3.1 19 100 0 116 36 5 22 36 1.77
109443--109477 18 1.9 18 100 0 70 22 28 2 45 1.67
110048--110089 21 2.0 21 86 9 59 50 9 14 26 1.73
110144--110185 21 2.0 21 86 9 59 50 9 14 26 1.73
110013--110252 96 2.5 96 91 2 376 36 18 22 22 1.95
120464--120523 30 2.0 30 100 0 120 23 10 16 50 1.75
122035--122101 21 3.2 21 100 0 134 35 14 8 40 1.78
122093--122117 12 2.1 12 100 0 50 16 16 8 60 1.58
122728--122768 21 1.9 22 90 5 66 12 12 0 75 1.05
122794--122838 21 2.1 21 95 0 81 60 0 11 28 1.31
123458--123511 27 2.0 27 96 0 99 27 37 3 31 1.75
124050--124179 12 10.8 12 92 0 215 8 27 16 47 1.75
124180--124296 24 4.9 24 74 8 94 5 19 19 55 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
124176--124292 36 3.2 36 100 0 234 5 19 19 55 1.61
124171--124268 12 8.2 12 72 8 83 5 20 19 55 1.62
124325--124361 9 4.1 9 100 0 74 0 43 0 56 0.99
128242--128300 18 3.0 20 81 11 61 57 0 1 40 1.09
128271--128313 19 2.2 20 83 8 52 60 0 0 39 0.97
131322--131363 21 2.0 21 86 9 59 26 14 9 50 1.73
131303--131494 96 2.0 96 98 0 375 21 21 18 38 1.94
131418--131459 21 2.0 21 86 9 59 26 14 9 50 1.73
132030--132064 18 1.9 18 100 0 70 45 2 28 22 1.67
141186--141243 19 3.1 19 100 0 116 36 22 5 36 1.77
148158--148285 21 6.1 21 100 0 256 28 24 4 42 1.74
149696--149748 15 3.5 15 92 0 79 26 33 3 35 1.75
149696--149759 30 2.1 30 82 5 76 25 35 4 34 1.77
149977--150005 6 4.8 6 100 0 58 51 0 31 17 1.45
150625--150704 18 4.4 18 95 0 133 21 53 5 20 1.64
151040--151131 24 3.8 24 98 0 166 28 15 20 35 1.93
152701--152757 21 2.7 21 76 10 71 64 10 12 12 1.49
154006--154071 21 3.1 21 100 0 132 4 27 13 54 1.58
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!