NC_068653.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_068653.1 Dracaena cinnabari chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155371
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6864--6929 34 1.9 34 100 0 132 36 0 24 39 1.56
8373--8610 119 2.0 119 100 0 476 41 11 10 36 1.77
8801--8912 19 6.1 19 67 17 74 45 0 4 49 1.28
8805--8950 73 2.0 73 100 0 292 43 1 6 47 1.38
8886--8927 17 2.5 17 80 7 50 45 0 2 52 1.13
32401--32469 33 2.1 33 100 0 138 30 23 20 26 1.98
35936--35968 17 1.9 17 100 0 66 30 6 12 51 1.63
44246--44457 106 2.0 106 100 0 424 38 11 13 36 1.80
50092--50119 14 2.0 14 100 0 56 28 14 21 35 1.92
50469--50517 23 2.1 23 100 0 98 44 8 4 42 1.53
56919--56945 14 1.9 14 100 0 54 62 7 14 14 1.51
57729--57824 48 2.0 48 100 0 192 25 6 18 50 1.70
65943--65984 19 2.3 19 83 4 50 23 14 16 45 1.84
66143--66254 55 2.0 55 100 0 224 26 14 23 35 1.93
66885--66914 15 2.0 15 100 0 60 80 13 0 6 0.91
67060--67311 123 2.0 123 100 0 504 33 16 19 30 1.94
67884--67915 15 2.1 16 94 5 57 62 6 0 31 1.20
67985--68028 21 2.1 21 91 0 70 31 25 11 31 1.91
79322--79370 24 2.0 24 92 0 80 28 32 12 26 1.92
79891--80117 111 2.0 111 99 0 445 33 16 19 29 1.94
82159--82195 19 1.9 19 94 0 65 27 5 2 64 1.28
86507--86558 23 2.3 23 96 3 97 46 7 21 25 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
88994--89083 21 4.1 21 89 4 126 13 25 10 51 1.72
91440--91492 24 2.2 24 93 0 88 35 9 20 33 1.85
108837--108889 27 2.0 27 100 0 106 22 22 18 35 1.95
113379--113414 18 2.0 18 100 0 72 38 11 0 50 1.38
118125--118149 12 2.1 12 100 0 50 52 8 0 40 1.31
118172--118230 17 3.5 16 78 17 57 28 3 1 66 1.18
118183--118214 13 2.4 14 94 5 57 28 0 0 71 0.86
121068--121109 17 2.3 18 80 16 50 47 11 4 35 1.61
126316--126355 15 2.7 15 84 0 53 35 7 2 55 1.42
127860--127897 18 2.1 18 95 0 67 31 5 13 50 1.63
127851--127888 15 2.5 15 95 0 67 34 5 7 52 1.53
130353--130405 27 2.0 27 100 0 106 35 18 22 22 1.95
147750--147802 24 2.2 24 93 0 88 33 20 9 35 1.85
150159--150248 21 4.1 21 89 4 126 51 10 25 13 1.72
152684--152735 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!