NC_070085.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_070085.1 Barleria strigosa voucher A. chaveerach 1097 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152272
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3147--3176 15 2.0 15 93 0 51 13 23 10 53 1.69
11953--11987 9 4.0 9 85 7 54 54 0 8 37 1.31
11950--11984 17 2.1 17 100 0 70 51 0 5 42 1.25
22153--22180 14 2.0 14 100 0 56 21 7 0 71 1.09
22187--22220 11 3.0 11 91 8 59 44 0 17 38 1.49
22187--22223 18 2.1 18 90 10 58 43 0 16 40 1.48
29305--29330 13 2.0 13 100 0 52 38 7 15 38 1.76
31300--31329 15 2.0 15 100 0 60 33 0 20 46 1.51
45715--45758 15 2.8 16 93 6 72 40 4 13 40 1.65
54090--54127 13 2.9 13 84 7 51 73 0 0 26 0.83
54092--54128 16 2.3 17 90 9 60 72 0 0 27 0.84
56404--56447 20 2.2 20 100 0 88 45 9 11 34 1.72
59548--59591 21 2.1 21 100 0 88 31 22 13 31 1.93
63580--63613 17 2.0 17 100 0 68 58 11 5 23 1.55
67581--67610 14 2.1 14 93 0 51 33 16 13 36 1.88
67639--67685 21 2.3 20 82 10 51 53 8 12 25 1.67
67763--67803 21 2.0 21 90 0 64 29 24 9 36 1.87
80289--80316 13 2.2 13 100 0 56 42 17 7 32 1.77
82948--82977 15 2.0 15 93 0 51 33 23 3 40 1.71
88548--88602 24 2.5 22 85 8 67 14 23 12 49 1.78
88570--88637 21 3.2 21 77 8 75 11 22 8 57 1.61
90959--90998 18 2.2 18 100 0 80 30 10 25 35 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106758--106818 31 2.0 31 93 0 104 40 21 9 27 1.85
109129--109153 11 2.3 11 100 0 50 64 0 0 36 0.94
116708--116732 12 2.1 12 100 0 50 44 16 0 40 1.47
117443--117476 17 2.0 17 100 0 68 47 11 29 11 1.76
129259--129319 31 2.0 31 93 0 104 27 9 21 40 1.85
145079--145118 18 2.2 18 100 0 80 35 25 10 30 1.88
147440--147529 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!