NC_070169.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_070169.1 Phyllanthus acidus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156331
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3717--3758 21 2.0 21 100 0 84 42 0 4 52 1.22
7799--7843 22 2.0 22 100 0 90 40 13 8 37 1.76
9165--9210 12 3.7 13 74 11 51 26 10 4 58 1.50
9312--9358 12 3.8 12 81 15 51 48 14 0 36 1.44
9327--9362 14 2.6 14 95 0 63 55 8 0 36 1.30
31016--31041 12 2.2 12 100 0 52 42 15 15 26 1.87
31596--31633 19 2.0 19 89 0 58 42 5 15 36 1.70
32519--32611 46 2.0 46 97 0 177 33 3 24 38 1.72
37547--37597 11 4.5 11 81 18 61 56 0 7 35 1.28
37548--37603 21 2.6 21 91 8 87 57 0 8 33 1.30
37871--37904 17 2.0 17 88 11 52 58 0 0 41 0.98
37869--37922 20 2.5 21 82 11 65 57 0 0 42 0.98
48423--48465 21 2.0 21 90 0 68 39 13 16 30 1.87
53717--53773 17 3.4 17 92 0 87 33 15 14 36 1.88
64888--64925 16 2.4 16 95 0 67 44 10 7 36 1.68
69443--69472 15 1.9 16 93 6 53 40 6 0 53 1.27
69438--69479 15 2.9 14 77 19 50 42 4 2 50 1.36
73711--73756 18 2.4 19 80 20 60 47 0 0 52 1.00
75666--75703 17 2.2 18 85 4 51 10 15 13 60 1.59
78383--78417 16 2.3 15 90 9 54 14 8 2 74 1.17
81047--81095 24 2.0 24 88 0 71 28 22 16 32 1.95
82009--82051 21 2.0 21 100 0 86 32 4 9 53 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90822--90889 21 3.2 21 82 0 82 11 22 7 58 1.57
93239--93295 18 3.2 17 87 5 78 28 7 29 35 1.83
111106--111145 20 2.0 20 100 0 80 40 5 0 55 1.22
113930--113961 16 2.0 16 100 0 64 43 18 0 37 1.51
115680--115721 17 2.5 17 96 0 75 52 4 0 42 1.22
115692--115734 22 2.0 22 90 0 68 46 4 2 46 1.36
115689--115726 9 4.3 9 80 6 51 50 2 0 47 1.15
130994--131033 20 2.0 20 100 0 80 55 0 5 40 1.22
148844--148900 18 3.2 18 87 5 80 35 29 7 28 1.83
151251--151339 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!