NC_071779.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_071779.1 Bambusa tuldoides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 139359
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7797--7834 20 1.9 20 84 10 51 23 10 15 50 1.75
8316--8351 17 2.1 17 100 0 72 52 33 0 13 1.41
15853--15981 68 1.9 68 91 0 213 29 13 26 30 1.94
20483--20518 18 2.0 18 100 0 72 38 22 5 33 1.77
21038--21078 20 2.0 20 100 0 82 26 14 9 48 1.75
26686--26726 21 2.0 21 100 0 82 26 29 14 29 1.95
27579--27608 15 2.0 15 100 0 60 33 33 13 20 1.91
28655--28714 21 2.9 21 94 0 102 38 16 30 15 1.89
28655--28894 42 5.9 42 77 11 182 40 16 28 14 1.88
28720--28957 21 11.8 20 69 12 139 40 16 29 13 1.87
28872--29044 33 5.0 33 70 14 132 38 16 32 13 1.87
38048--38086 19 2.1 19 85 9 53 2 17 5 74 1.12
58057--58090 18 1.9 18 94 5 61 52 5 17 23 1.66
67868--68006 21 6.6 21 88 0 179 37 26 7 28 1.83
68294--68352 21 2.8 21 72 10 57 47 22 11 18 1.81
70685--70718 17 2.0 17 94 0 59 50 5 14 29 1.67
78520--78584 18 3.6 18 93 0 103 20 24 15 40 1.91
78519--78595 18 4.3 18 88 3 102 19 25 16 37 1.93
78806--78863 18 3.3 18 80 7 57 5 18 6 68 1.31
82099--82195 45 2.2 45 92 1 160 21 15 15 47 1.82
107730--107762 16 2.1 16 100 0 66 57 6 12 24 1.57
112521--112552 16 2.0 16 100 0 64 43 12 6 37 1.68
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112998--113029 13 2.5 13 94 0 55 21 3 9 65 1.35
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Tables: 1
The End!