NC_072298.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_072298.1 Xanthium strumarium chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151852
Tables: 1
This is table 1 of 1 ( 44 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
270--298 13 2.2 13 100 0 58 62 0 6 31 1.22
4885--4913 15 1.9 15 100 0 58 41 13 6 37 1.72
5092--5127 18 2.0 18 100 0 72 61 5 27 5 1.41
5144--5169 13 2.0 13 100 0 52 53 0 23 23 1.46
7489--7518 15 2.0 15 93 0 51 46 0 10 43 1.37
8111--8146 19 1.9 18 94 5 63 30 19 11 38 1.86
23396--23446 17 3.0 17 100 0 102 11 17 0 70 1.16
23439--23472 14 2.5 14 95 4 61 32 8 17 41 1.80
25457--25481 12 2.1 12 100 0 50 60 8 8 24 1.52
30295--30336 22 2.0 22 86 13 61 54 2 14 28 1.52
35039--35073 1 35.0 1 94 0 61 97 0 2 0 0.19
42074--42098 12 2.1 12 100 0 50 76 0 16 8 1.02
42584--42619 18 2.0 18 100 0 72 38 22 5 33 1.77
46790--46817 14 2.0 14 100 0 56 28 21 7 42 1.79
48007--48452 74 6.0 74 98 0 856 28 19 26 26 1.99
58144--58180 19 1.9 19 88 0 56 18 16 5 59 1.55
58600--58637 20 1.9 20 89 10 60 47 5 7 39 1.55
58622--58649 12 2.3 12 100 0 56 57 0 7 35 1.26
58605--58675 32 2.1 35 84 7 94 50 5 5 38 1.49
60134--60169 18 2.0 18 100 0 72 0 27 11 61 1.30
60195--60221 13 2.1 13 100 0 54 44 7 14 33 1.73
62951--62977 13 2.1 13 100 0 54 59 14 25 0 1.36
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67451--67491 21 2.0 21 95 0 73 31 24 9 34 1.88
74208--74243 18 2.0 18 100 0 72 50 5 16 27 1.68
77208--77232 12 2.1 12 100 0 50 56 0 16 28 1.41
78445--78479 9 4.0 9 85 7 54 0 25 11 62 1.28
78447--78481 17 2.1 17 100 0 70 0 28 11 60 1.32
90896--90940 18 2.5 18 100 0 90 28 11 26 33 1.91
97835--97876 21 2.0 21 100 0 84 38 23 9 28 1.86
98532--98589 23 2.6 23 89 5 84 32 8 6 51 1.59
106589--106650 32 1.9 32 93 0 106 41 22 8 27 1.82
107032--107074 11 4.0 11 93 6 79 55 0 25 18 1.42
107031--107073 21 2.0 21 100 0 86 58 0 23 18 1.40
108874--108908 18 1.9 18 88 0 52 57 2 14 25 1.51
109552--109594 21 2.0 21 95 0 77 51 18 16 13 1.77
117849--117889 20 2.0 21 95 4 75 31 0 14 53 1.41
119686--119791 53 2.0 53 98 0 203 31 16 17 33 1.93
126693--126727 18 1.9 17 100 0 52 28 14 5 51 1.65
128402--128444 11 4.0 11 93 6 79 18 25 0 55 1.42
128403--128445 21 2.0 21 100 0 86 18 23 0 58 1.40
128826--128887 32 1.9 32 93 0 106 27 8 22 41 1.82
136887--136944 23 2.6 23 89 5 84 51 6 8 32 1.59
137600--137641 21 2.0 21 100 0 84 28 9 23 38 1.86
144536--144580 18 2.5 18 100 0 90 33 26 11 28 1.91
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Tables: 1
The End!