NC_073005.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_073005.1 Solanum virginianum voucher SUPG24 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154497
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5020--5045 13 2.0 13 100 0 52 23 15 0 61 1.33
6259--6305 24 2.0 23 95 4 85 42 4 8 44 1.54
16673--16706 11 3.1 11 91 8 52 17 17 0 64 1.29
27970--28001 15 2.1 15 100 0 64 31 0 6 62 1.20
31847--31882 15 2.4 16 86 13 58 36 13 8 41 1.75
31855--31884 15 2.0 15 100 0 60 33 13 13 40 1.83
42518--42561 21 2.0 22 87 12 65 45 0 4 50 1.22
42673--42697 11 2.3 11 100 0 50 48 0 0 52 1.00
69648--69688 21 2.0 21 90 0 64 29 24 9 36 1.87
69983--70014 16 2.0 16 100 0 64 31 6 25 37 1.81
90437--90526 21 4.1 21 78 9 83 13 21 10 55 1.66
92879--92938 18 3.3 18 88 0 93 31 10 25 33 1.89
93824--93867 21 2.1 21 100 0 88 25 18 20 36 1.95
100676--100737 22 2.7 24 80 12 76 35 3 9 51 1.51
108452--108517 32 2.1 32 94 0 114 42 22 9 25 1.83
112610--112648 20 2.0 20 85 10 53 56 23 0 20 1.42
113327--113351 12 2.1 12 100 0 50 24 16 0 60 1.36
114216--114252 19 1.9 19 88 0 56 43 8 0 48 1.32
131594--131659 32 2.1 32 94 0 114 25 9 22 42 1.83
139373--139434 22 2.7 24 80 12 76 51 9 3 35 1.51
146235--146278 21 2.1 21 100 0 88 36 20 18 25 1.95
147164--147223 18 3.3 18 88 0 93 33 25 10 31 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149576--149665 21 4.1 22 77 8 85 55 10 21 13 1.66
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Tables: 1
The End!