NC_073501.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_073501.1 Microcos paniculata voucher PDBK2011-0358 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159456
Tables: 1
This is table 1 of 1 ( 81 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5079--5129 15 3.1 16 77 22 61 70 1 5 21 1.18
5074--5129 12 4.8 12 72 16 55 71 1 5 21 1.15
5925--5959 17 2.1 17 100 0 70 40 17 5 37 1.73
6574--6606 16 2.1 16 100 0 66 30 12 0 57 1.35
6621--6663 21 2.0 21 95 0 77 46 13 6 32 1.71
6715--6748 17 2.0 17 94 0 59 47 14 14 23 1.82
8280--8347 34 2.0 34 88 5 102 29 10 0 60 1.30
8329--8369 13 2.9 14 85 10 57 41 7 0 51 1.30
9733--9762 15 2.0 15 100 0 60 40 6 13 40 1.71
10019--10113 23 4.1 24 67 23 69 50 1 2 46 1.20
10088--10127 10 4.2 10 84 12 57 62 0 0 37 0.95
10088--10133 18 2.6 18 86 6 58 63 0 0 36 0.95
12466--12506 16 2.6 16 92 0 64 48 2 0 48 1.14
12538--12585 23 2.1 23 88 11 73 37 4 2 56 1.30
13215--13246 16 2.0 16 100 0 64 25 6 12 56 1.59
13318--13361 18 2.4 18 79 20 56 34 6 0 59 1.24
13397--13431 16 2.1 17 89 5 54 31 2 0 65 1.07
13421--13452 16 2.0 16 93 0 55 18 9 0 71 1.12
31848--31880 13 2.8 12 90 9 50 72 9 6 12 1.26
32613--32646 16 2.1 16 100 0 68 52 17 17 11 1.73
38038--38074 19 2.0 18 89 5 56 78 0 2 18 0.87
38112--38144 13 2.5 13 90 0 57 54 0 9 36 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
45378--45415 16 2.3 17 90 4 60 18 10 10 60 1.57
48672--48706 11 3.1 12 88 12 56 60 0 0 40 0.97
48674--48712 11 3.5 11 83 13 53 64 0 0 35 0.94
49129--49164 18 2.0 18 100 0 72 55 5 0 38 1.23
49184--49217 16 2.2 16 89 5 52 50 0 0 50 1.00
49225--49275 16 3.2 15 76 18 50 37 3 0 58 1.16
49343--49370 14 2.0 14 100 0 56 35 7 0 57 1.26
50373--50402 15 2.0 15 100 0 60 46 6 26 20 1.75
53933--53960 14 2.0 14 100 0 56 42 0 14 42 1.45
53994--54028 14 2.5 14 95 0 61 8 5 0 85 0.73
54005--54038 16 2.1 16 88 5 50 8 2 2 85 0.80
54070--54137 35 1.9 35 88 5 102 39 4 5 50 1.47
54120--54194 37 2.1 36 92 7 125 44 2 0 53 1.14
54127--54198 28 2.6 29 82 14 105 44 1 0 54 1.08
54126--54200 9 9.5 8 75 22 54 42 1 0 56 1.08
54188--54243 25 2.2 26 87 6 78 26 5 0 67 1.11
57827--57922 11 8.5 11 74 8 70 31 3 3 62 1.26
57789--57889 23 4.5 23 79 14 104 35 2 0 60 1.19
57835--57936 44 2.3 43 81 9 109 31 3 2 61 1.29
57827--57929 35 3.0 33 82 13 102 31 3 2 62 1.28
58083--58108 13 2.0 13 100 0 52 38 0 15 46 1.46
62501--62536 18 2.0 18 100 0 72 61 11 5 22 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62748--62772 11 2.3 11 100 0 50 40 8 0 52 1.31
67010--67038 12 2.3 13 94 5 51 55 3 0 41 1.17
67044--67108 14 4.6 14 74 11 51 60 0 13 26 1.34
67081--67132 24 2.2 23 86 3 68 59 1 13 25 1.44
71445--71511 13 4.8 14 76 10 57 35 1 0 62 1.04
71451--71501 8 6.1 8 77 22 52 35 1 0 62 1.06
71454--71509 10 5.6 10 82 17 64 35 1 0 62 1.06
71449--71575 20 6.6 18 63 20 51 36 5 0 58 1.22
71446--71578 9 15.2 9 66 21 52 36 5 0 58 1.21
71570--71630 19 3.0 22 84 13 62 47 0 0 52 1.00
71580--71630 19 2.7 19 90 6 77 49 0 0 50 1.00
71787--71825 21 1.9 21 94 5 71 30 25 10 33 1.89
85801--85825 11 2.3 11 100 0 50 40 0 16 44 1.47
86733--86767 15 2.3 15 100 0 70 40 11 5 42 1.65
87603--87638 17 2.1 17 100 0 72 36 16 5 41 1.72
89012--89042 14 2.2 14 100 0 62 29 12 6 51 1.65
93209--93277 21 3.3 21 87 2 95 11 24 8 55 1.64
95674--95726 18 2.9 18 91 0 88 28 11 28 32 1.91
98694--98739 22 2.0 24 87 8 69 47 2 4 45 1.34
103457--103482 13 2.0 13 100 0 52 7 0 0 92 0.39
103976--104026 18 3.1 18 72 21 65 23 7 3 64 1.37
104013--104071 11 5.5 11 78 13 54 33 1 13 50 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
104009--104064 27 2.1 27 100 0 112 32 3 10 53 1.53
104013--104067 16 3.4 16 80 7 58 34 1 12 50 1.51
113866--113907 21 2.0 21 81 9 50 69 4 2 23 1.20
117002--117044 21 2.0 21 100 0 86 23 4 23 48 1.69
122182--122224 22 2.0 22 81 9 52 46 2 6 44 1.43
143776--143831 27 2.1 27 100 0 112 53 10 3 32 1.53
143773--143828 11 5.1 11 80 10 62 51 12 1 33 1.50
143814--143864 18 3.1 18 75 18 65 64 3 7 23 1.37
143814--143872 32 2.0 29 81 15 68 66 3 10 20 1.36
144358--144383 13 2.0 13 100 0 52 92 0 0 7 0.39
149101--149146 22 2.0 24 87 8 69 45 4 2 47 1.34
152114--152166 18 2.9 18 91 0 88 32 28 11 28 1.91
154563--154651 21 4.1 21 84 5 90 53 10 23 12 1.68
154563--154631 21 3.3 21 87 2 95 55 8 24 11 1.64
158798--158828 14 2.2 14 100 0 62 51 6 12 29 1.65
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!