NC_073582.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_073582.1 Entada phaseoloides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159963
Tables: 1
This is table 1 of 1 ( 75 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4349--4373 13 1.9 13 100 0 50 76 8 0 16 1.02
5203--5227 12 2.1 12 100 0 50 64 8 0 28 1.22
5393--5433 20 2.0 20 86 9 57 36 0 0 63 0.95
5388--5437 24 2.1 24 92 0 82 36 0 0 64 0.94
5397--5429 17 2.0 16 94 5 57 36 0 0 63 0.95
6915--6999 32 2.9 30 86 13 124 43 0 0 56 0.99
6915--6985 10 7.7 10 70 24 50 42 0 0 57 0.98
6935--6988 10 5.2 10 76 8 54 40 0 0 59 0.98
7728--7768 14 3.2 13 83 10 57 48 0 2 48 1.14
7730--7779 20 2.6 19 84 12 59 54 0 4 42 1.19
7828--7925 13 7.2 13 88 6 133 47 1 6 44 1.34
7828--7925 27 3.6 27 89 8 137 47 1 6 44 1.34
7828--7925 40 2.4 42 89 8 148 47 1 6 44 1.34
9119--9151 10 3.5 10 88 12 52 39 9 9 42 1.68
9187--9220 17 2.1 17 88 5 52 47 5 2 44 1.42
9615--9648 17 2.0 17 100 0 68 41 0 5 52 1.25
10747--10804 19 3.2 19 76 14 59 37 0 1 60 1.07
11194--11233 20 2.0 20 100 0 80 35 10 5 50 1.58
11403--11431 13 2.1 14 93 6 51 55 3 6 34 1.44
16095--16123 14 2.1 14 100 0 58 41 0 6 51 1.28
16125--16162 20 1.9 20 100 0 76 50 5 5 39 1.48
18318--18357 20 2.0 20 100 0 80 75 0 10 15 1.05
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
20812--20841 15 2.0 15 93 0 51 36 10 6 46 1.64
23109--23145 18 2.1 18 100 0 74 48 16 10 24 1.77
24894--24922 15 1.9 15 100 0 58 41 0 6 51 1.28
30875--30966 11 8.0 11 71 19 55 59 2 2 35 1.21
30880--30959 25 3.2 25 75 10 65 61 1 2 35 1.18
32710--32738 14 2.0 15 93 6 51 6 10 0 82 0.83
34984--35009 11 2.4 11 100 0 52 50 15 0 34 1.45
35490--35528 13 3.0 13 100 0 78 53 0 23 23 1.46
40470--40550 37 2.1 37 81 9 90 37 2 0 60 1.10
40477--40547 15 4.7 16 73 23 73 38 1 0 60 1.06
40480--40564 23 3.7 24 78 12 99 37 1 1 60 1.12
40537--40583 20 2.4 20 85 3 60 29 0 4 65 1.11
40521--40585 23 3.0 23 82 14 77 32 0 3 64 1.09
40651--40722 18 4.0 18 98 0 135 50 1 11 37 1.47
40803--40832 10 3.1 10 95 4 53 26 10 0 63 1.26
47080--47112 17 1.9 17 93 0 57 57 6 9 27 1.53
49572--49603 15 2.1 16 94 5 57 78 0 6 15 0.95
55095--55157 27 2.2 29 88 8 94 57 7 11 23 1.60
55244--55295 17 3.0 17 84 15 79 25 11 0 63 1.28
57617--57647 15 2.1 15 100 0 62 25 12 0 61 1.32
59721--59768 20 2.3 21 92 3 80 60 14 2 22 1.45
59729--59770 10 4.2 10 85 11 59 61 14 2 21 1.43
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60190--60278 31 2.8 33 77 13 80 32 10 1 56 1.40
60233--60276 21 2.1 21 100 0 88 38 9 0 52 1.33
60232--60278 12 4.2 12 84 15 73 40 8 0 51 1.33
60295--60325 15 2.1 15 93 0 53 61 3 12 22 1.46
68244--68315 14 4.5 16 77 16 62 66 2 6 23 1.29
68248--68315 16 4.1 16 72 20 50 67 2 5 23 1.26
71889--71916 13 2.2 13 100 0 56 64 7 7 21 1.43
72380--72423 23 1.9 23 85 0 61 47 9 4 38 1.56
73168--73206 21 1.9 21 89 5 62 30 23 10 35 1.88
75096--75142 20 2.3 20 85 7 60 40 2 0 57 1.11
75086--75166 7 11.7 7 71 23 57 38 1 2 58 1.20
75085--75137 20 2.8 18 76 15 54 41 1 0 56 1.10
76718--76785 18 3.6 18 74 18 50 47 2 0 50 1.16
76774--76813 14 2.9 14 82 14 55 37 2 0 60 1.11
76743--76820 13 5.7 13 71 15 59 44 1 0 53 1.08
85144--85169 13 2.0 13 100 0 52 7 0 23 69 1.14
86317--86350 17 2.0 17 88 0 50 20 2 0 76 0.92
97257--97304 9 5.3 9 82 0 60 33 6 25 35 1.81
97264--97304 18 2.3 18 95 0 73 34 7 26 31 1.84
105467--105499 11 3.1 11 91 4 50 33 0 15 51 1.43
118934--118974 20 2.0 20 100 0 82 41 0 4 53 1.22
118996--119021 13 2.0 13 100 0 52 38 0 0 61 0.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
126520--126551 10 3.4 10 87 12 50 37 0 0 62 0.95
126580--126623 14 3.4 14 90 9 67 52 4 0 43 1.22
126579--126622 12 3.6 12 85 11 54 52 4 0 43 1.22
126586--126626 12 3.2 12 93 6 64 56 2 0 41 1.13
126773--126805 16 2.1 16 94 0 57 72 3 18 6 1.18
144437--144469 11 3.1 11 91 4 50 51 15 0 33 1.43
152175--152212 20 1.9 20 84 10 51 31 18 26 23 1.97
152632--152672 18 2.3 18 95 0 73 31 26 7 34 1.84
152632--152679 9 5.3 9 82 0 60 35 25 6 33 1.81
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Tables: 1
The End!