NC_079964.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_079964.1 Rosa chinensis var. semperflorens voucher JTWR-12 plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156603
Tables: 1
This is table 1 of 1 ( 54 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4342--4385 1 44.0 1 93 0 70 95 0 2 2 0.31
7242--7267 13 2.0 13 100 0 52 38 15 15 30 1.88
7465--7490 13 2.0 13 100 0 52 69 0 0 30 0.89
8158--8186 15 1.9 15 100 0 58 41 6 0 51 1.28
8182--8211 14 2.1 15 93 6 53 73 0 0 26 0.84
8780--8841 8 7.8 8 77 13 56 16 1 11 70 1.23
8778--8841 22 2.7 24 83 14 87 15 1 10 71 1.20
12691--12724 17 2.0 17 100 0 68 23 11 11 52 1.70
15166--15191 13 2.0 13 100 0 52 38 0 0 61 0.96
27202--27233 16 2.0 16 100 0 64 31 12 12 43 1.80
27546--27593 24 2.0 24 100 0 96 41 12 8 37 1.73
29086--29120 16 2.2 17 90 10 56 71 5 11 11 1.30
30639--30667 14 2.1 14 100 0 58 48 20 0 31 1.50
33078--33117 20 2.0 20 100 0 80 20 15 20 45 1.86
36958--37010 10 5.2 10 77 8 54 62 0 1 35 1.06
36979--37009 12 2.6 12 94 0 53 54 0 0 45 0.99
47541--47583 14 3.4 14 70 29 51 25 13 4 55 1.58
47540--47587 23 2.1 23 100 0 96 27 12 4 56 1.54
52630--52670 11 3.6 12 83 12 59 39 4 0 56 1.21
56437--56462 13 2.0 13 100 0 52 38 0 15 46 1.46
58574--58638 31 2.1 31 100 0 130 30 12 9 47 1.72
60105--60141 18 2.1 18 100 0 74 37 10 10 40 1.75
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60341--60377 15 2.5 15 91 4 58 24 8 0 67 1.17
66629--66703 17 4.1 17 76 18 78 37 6 8 48 1.59
66631--66697 23 3.2 23 61 30 58 38 7 7 46 1.60
66630--66710 40 2.0 40 100 0 162 38 7 7 46 1.60
66848--66895 19 2.6 19 96 3 89 25 20 10 43 1.83
67941--67989 11 4.6 11 75 17 50 22 12 0 65 1.26
67951--67990 19 2.1 19 100 0 80 27 10 0 62 1.27
69246--69284 21 1.9 21 94 5 71 33 23 10 33 1.88
75842--75877 18 2.0 18 94 0 63 36 5 13 44 1.68
80882--80913 13 2.5 13 100 0 64 12 6 6 75 1.19
90536--90603 21 3.2 21 82 0 82 11 22 7 58 1.57
92970--93006 18 2.1 18 100 0 74 32 5 27 35 1.79
100390--100416 12 2.2 12 100 0 54 7 7 0 85 0.75
100387--100420 17 2.0 17 88 11 52 8 8 0 82 0.85
100941--100984 6 8.0 6 76 19 51 34 2 15 47 1.58
100941--100988 11 4.5 11 87 7 73 33 2 16 47 1.58
100938--100981 21 2.1 21 100 0 88 31 4 13 50 1.62
110242--110269 14 2.0 14 100 0 56 42 21 7 28 1.79
114324--114357 11 3.0 11 87 8 50 32 0 5 61 1.20
114325--114372 12 3.9 12 84 12 62 39 0 2 58 1.10
115471--115510 14 2.9 13 88 7 53 57 2 2 37 1.26
122419--122458 17 2.5 17 84 8 57 37 2 2 57 1.26
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
125575--125606 16 2.0 16 93 0 55 31 3 12 53 1.54
132074--132111 14 2.6 15 83 8 51 28 13 15 42 1.85
132085--132112 14 2.0 14 100 0 56 28 7 21 42 1.79
141370--141413 6 8.0 6 76 19 51 47 15 2 34 1.58
141366--141413 11 4.5 11 87 7 73 47 16 2 33 1.58
141373--141416 21 2.1 21 100 0 88 50 13 4 31 1.62
141938--141964 12 2.2 12 100 0 54 85 0 7 7 0.75
141934--141967 17 2.0 17 88 11 52 82 0 8 8 0.85
149348--149384 18 2.1 18 100 0 74 35 27 5 32 1.79
151752--151840 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!