NC_080249.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_080249.1 Epimedium sempervirens chloroplast, complete sequence
Parameters: 2 7 7 80 10 50 500
Length: 157253
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4917--5279 152 2.4 144 88 9 559 34 15 12 37 1.86
4977--5319 152 2.3 152 98 0 668 33 14 11 40 1.82
29674--29705 15 2.1 15 94 0 55 21 12 15 50 1.77
41338--41368 15 2.1 15 100 0 62 12 25 38 22 1.90
50118--50158 20 2.0 20 100 0 82 29 14 14 41 1.86
74263--74413 48 2.9 53 78 13 168 29 17 15 37 1.91
74316--74413 48 2.0 48 96 0 178 31 20 14 33 1.92
82030--82076 24 2.0 24 86 0 67 25 36 14 23 1.93
89332--89378 13 3.5 14 88 8 55 61 8 10 19 1.53
89344--89378 13 2.6 13 95 4 61 62 5 11 20 1.48
89711--89777 33 2.0 33 88 0 98 31 17 29 20 1.96
92083--92176 27 3.4 27 85 8 143 35 6 25 32 1.81
94749--94796 9 5.3 9 89 0 69 33 0 35 31 1.58
94745--94796 18 2.9 18 82 0 77 34 0 34 30 1.58
94745--94797 27 2.0 27 96 0 97 33 0 33 32 1.58
111026--111056 15 2.1 15 100 0 62 61 0 32 6 1.21
113683--113718 15 2.4 15 95 0 63 55 5 19 19 1.62
113888--113942 12 4.6 12 93 0 83 45 12 34 7 1.70
113950--114088 66 2.1 67 91 4 226 43 18 20 17 1.89
114053--114128 24 3.2 24 62 14 57 44 15 22 17 1.86
114043--114136 48 2.0 48 93 0 161 44 17 20 18 1.87
130517--130555 18 2.2 18 86 9 53 35 12 7 43 1.72
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131547--131640 48 2.0 48 93 0 161 18 20 17 44 1.87
131595--131733 66 2.1 67 91 4 226 17 20 18 43 1.89
131741--131795 12 4.6 12 93 0 83 7 34 12 45 1.70
131965--132000 15 2.4 15 95 0 63 19 19 5 55 1.62
132038--132114 33 2.3 33 84 4 93 24 24 7 42 1.81
134627--134657 15 2.1 15 100 0 62 6 32 0 61 1.21
150891--150938 9 5.3 9 89 0 69 29 35 0 35 1.58
150886--150938 27 2.0 27 96 0 97 32 33 0 33 1.58
150887--150938 18 2.9 18 82 0 77 30 34 0 34 1.58
153507--153600 27 3.4 27 85 8 143 32 25 6 35 1.81
155906--155972 33 2.0 33 88 0 98 20 29 17 31 1.96
156305--156339 13 2.6 13 95 4 61 20 11 5 62 1.48
156305--156365 13 4.5 13 80 13 52 21 11 6 60 1.53
156670--156716 25 1.9 24 83 12 60 59 4 12 23 1.51
156670--156716 24 1.9 25 86 4 69 59 4 12 23 1.51
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Tables: 1
The End!