NC_080912.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_080912.1 Trichosanthes rosthornii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157077
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4300--4343 23 1.9 23 85 0 61 45 15 6 31 1.73
8916--8954 19 2.1 19 85 9 53 17 23 0 58 1.38
8952--9039 8 10.6 8 70 20 56 46 4 5 43 1.47
8959--9014 18 3.2 18 83 14 73 48 3 3 44 1.37
8950--9014 16 3.9 16 86 7 94 47 3 4 44 1.39
11224--11276 25 2.1 25 100 0 106 62 7 0 30 1.23
29870--29905 17 2.1 17 89 0 54 44 2 13 38 1.59
30231--30277 18 2.7 18 83 3 60 42 21 8 27 1.81
34252--34283 15 2.1 15 94 0 55 59 6 21 12 1.55
34274--34332 25 2.3 26 85 8 86 47 6 8 37 1.61
37403--37431 14 2.1 14 100 0 58 27 0 6 65 1.18
38321--38372 13 3.8 13 73 14 50 36 17 15 30 1.91
46137--46168 16 2.0 16 100 0 64 25 6 18 50 1.70
48963--49004 6 7.0 6 80 20 52 35 0 0 64 0.94
48963--49007 14 3.1 14 90 6 63 37 0 0 62 0.96
61752--61785 12 3.0 12 91 8 54 61 8 0 29 1.26
91051--91133 21 3.7 23 75 18 77 13 22 9 54 1.68
91073--91140 21 3.2 21 82 0 82 11 22 7 58 1.57
93499--93555 18 3.2 18 94 0 105 31 5 28 35 1.79
93499--93555 9 6.3 9 72 0 51 31 5 28 35 1.79
109730--109795 32 2.1 32 97 0 123 40 24 9 25 1.84
133586--133651 32 2.1 32 97 0 123 25 9 24 40 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149826--149882 18 3.2 18 94 0 105 35 28 5 31 1.79
149826--149882 9 6.3 9 72 0 51 35 28 5 31 1.79
152242--152330 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!