NC_082280.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_082280.1 Trachelospermum jasminoides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154757
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99--123 13 1.9 13 100 0 50 16 12 0 72 1.13
94--146 17 3.1 17 81 18 65 18 15 0 66 1.26
4302--4327 12 2.2 12 100 0 52 69 7 0 23 1.14
6278--6321 22 2.0 22 100 0 88 54 4 13 27 1.58
8731--8837 17 6.1 17 66 23 53 41 0 6 52 1.27
8764--8832 3 23.0 3 73 16 54 39 0 4 56 1.19
8717--8850 8 16.4 8 73 20 82 41 0 5 52 1.23
8969--8994 11 2.4 11 100 0 52 34 0 7 57 1.27
31958--32065 2 61.0 2 69 23 64 50 0 0 48 1.13
31955--32069 19 5.8 19 76 20 103 50 0 0 47 1.13
31955--32035 7 12.4 7 71 23 70 46 0 0 53 1.00
31982--32054 26 3.0 26 79 16 77 50 0 0 49 1.00
31995--32070 21 3.6 21 83 7 82 53 1 1 43 1.17
32038--32079 21 2.0 21 90 0 66 54 4 7 33 1.49
32910--32956 23 2.0 23 100 0 94 44 0 17 38 1.48
36582--36618 18 2.1 18 100 0 74 40 16 0 43 1.48
46073--46103 15 2.1 15 93 0 53 61 3 19 16 1.48
46202--46235 16 2.1 16 100 0 68 44 17 0 38 1.49
47937--47969 16 2.0 17 94 5 59 36 12 6 45 1.66
47954--47991 20 1.9 20 88 0 58 36 7 7 47 1.62
49197--49236 19 2.1 19 95 0 71 25 17 5 52 1.64
53142--53192 16 3.3 15 78 8 57 35 7 11 45 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60143--60188 14 3.2 14 79 14 58 76 2 13 8 1.11
68296--68327 16 1.9 17 93 6 57 28 12 6 53 1.62
68803--68843 21 2.0 21 90 0 64 31 26 7 34 1.84
89585--89639 24 2.5 22 85 8 67 14 23 12 49 1.78
89603--89656 21 2.6 21 82 11 74 9 20 11 59 1.59
92023--92102 9 8.9 9 71 0 70 30 8 25 36 1.86
92023--92102 18 4.4 18 96 0 142 30 8 25 36 1.86
107941--107980 20 2.0 20 100 0 80 50 25 10 15 1.74
110642--110691 25 2.0 25 100 0 100 44 12 8 36 1.71
112316--112354 20 2.0 20 85 10 53 56 23 0 20 1.42
113051--113080 10 2.9 10 95 5 51 23 16 0 60 1.36
114355--114383 14 2.1 14 100 0 58 34 6 20 37 1.80
119589--119667 3 27.0 3 73 14 67 39 0 0 60 0.97
119600--119671 24 3.0 24 88 8 94 43 0 0 56 0.99
119626--119673 24 2.0 24 100 0 96 50 0 0 50 1.00
119633--119704 24 3.2 24 79 15 73 55 0 0 44 0.99
119664--119710 20 2.4 20 96 3 87 57 0 0 42 0.98
124160--124195 17 2.1 17 100 0 72 30 11 5 52 1.59
125282--125323 22 2.0 21 85 4 57 11 9 9 69 1.38
127617--127652 19 1.9 19 88 5 56 0 19 5 75 1.00
131529--131568 20 2.0 20 100 0 80 15 10 25 50 1.74
147407--147486 18 4.4 18 96 0 142 36 25 8 30 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147407--147486 9 8.9 9 71 0 70 36 25 8 30 1.86
149853--149906 21 2.6 21 82 11 74 59 11 20 9 1.59
149835--149924 21 4.1 22 74 8 67 53 10 24 12 1.68
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Tables: 1
The End!