ON881575.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: ON881575.1 UNVERIFIED: Terminalia bellirica chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 159645
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7--39 11 2.8 12 90 9 50 36 0 27 36 1.57
7363--7413 22 2.3 23 89 3 77 37 9 7 45 1.67
7816--7841 13 2.0 13 100 0 52 69 0 15 15 1.20
9285--9322 16 2.3 16 95 4 67 28 2 0 68 1.03
9656--9690 18 2.0 17 94 5 61 51 0 5 42 1.25
9690--9758 11 5.7 11 81 18 84 73 0 8 17 1.07
9683--9758 25 3.0 25 96 0 143 72 0 9 18 1.10
9683--9760 14 6.1 13 81 18 101 73 0 8 17 1.09
11597--11664 19 3.3 19 76 23 75 47 5 2 44 1.42
11604--11670 19 3.0 23 72 27 81 46 7 2 43 1.47
16200--16250 23 2.3 23 80 19 63 70 0 5 23 1.09
16370--16421 17 3.1 17 86 5 61 25 5 0 69 1.10
16392--16424 17 1.9 17 100 0 66 27 0 0 72 0.85
22932--22961 15 2.0 15 93 0 51 36 13 16 33 1.88
31185--31222 17 2.4 16 86 8 51 10 0 15 73 1.09
34436--34501 34 1.9 34 90 0 105 39 9 4 46 1.56
34509--34534 12 2.2 12 100 0 52 42 0 7 50 1.31
49842--49880 16 2.4 16 95 0 69 38 7 0 53 1.30
65194--65230 18 2.1 18 89 0 56 5 16 5 72 1.21
68044--68087 22 2.0 22 100 0 88 45 4 27 22 1.72
70813--70843 15 2.1 15 93 0 53 25 22 6 45 1.76
71649--71690 20 2.1 20 100 0 84 54 4 4 35 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
74300--74340 20 2.0 20 100 0 82 24 9 9 56 1.62
76541--76580 20 2.0 20 100 0 80 30 10 0 60 1.30
84246--84284 20 2.0 20 90 5 62 20 25 10 43 1.83
86145--86197 24 2.2 25 93 3 90 54 5 0 39 1.24
93539--93625 21 4.2 21 88 1 113 11 22 8 57 1.60
93539--93608 21 3.3 21 95 0 122 10 21 10 58 1.59
93516--93626 42 2.6 42 76 9 116 12 22 9 55 1.64
95994--96038 18 2.5 18 100 0 90 33 6 31 28 1.83
115018--115046 12 2.4 12 100 0 58 72 6 0 20 1.07
117464--117495 16 2.0 16 93 0 55 50 0 9 40 1.35
152440--152484 18 2.5 18 100 0 90 28 31 6 33 1.83
152440--152483 9 4.9 9 80 0 52 29 31 4 34 1.78
154870--154939 21 3.3 21 95 0 122 58 10 21 10 1.59
154852--154962 21 5.1 21 85 3 105 55 9 22 12 1.64
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Tables: 1
The End!