OP650214.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OP650214.1 Spondias pinnata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162215
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
281--306 12 2.2 12 100 0 52 15 0 15 69 1.20
7652--7688 17 2.2 17 100 0 74 21 43 0 35 1.53
9407--9458 10 5.4 10 81 9 72 30 13 0 55 1.38
9402--9458 19 3.0 19 100 0 114 31 15 0 52 1.43
9402--9450 9 5.2 9 80 9 62 32 18 0 48 1.48
10159--10193 17 2.1 17 88 0 52 25 8 11 54 1.64
14806--14837 16 2.0 16 100 0 64 12 6 6 75 1.19
15743--15787 22 2.0 22 86 0 63 37 17 6 37 1.76
16400--16430 14 2.2 14 94 0 53 16 3 12 67 1.35
40080--40126 15 3.2 15 84 3 60 53 2 2 42 1.25
40360--40384 13 1.9 13 100 0 50 16 16 28 40 1.89
55783--55840 3 20.3 3 73 16 52 34 0 0 65 0.93
55787--55836 14 3.9 14 73 24 56 36 0 0 64 0.94
55782--55838 23 2.5 23 94 5 98 33 0 0 66 0.92
56594--56651 28 2.1 28 100 0 116 31 10 13 44 1.78
61654--61681 14 2.0 14 100 0 56 28 14 28 28 1.95
63650--63685 18 2.0 18 88 0 54 72 0 13 13 1.13
63770--63853 23 3.7 23 98 1 161 38 9 11 40 1.75
63779--63849 13 5.9 13 81 18 100 39 8 12 39 1.74
69971--69999 14 2.1 14 100 0 58 51 20 6 20 1.70
73286--73324 21 1.9 21 94 5 71 30 25 10 33 1.89
75143--75172 15 2.0 15 100 0 60 26 13 0 60 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94427--94501 21 3.2 24 72 12 75 10 22 9 57 1.61
96866--96979 18 6.3 18 96 0 210 29 10 26 33 1.90
104693--104753 19 3.3 18 72 6 50 9 13 0 77 1.00
105253--105290 18 2.1 18 100 0 76 21 10 5 63 1.46
109816--109887 38 1.9 37 94 2 126 31 22 25 20 1.98
113414--113479 32 2.1 32 91 5 107 42 25 6 25 1.78
115018--115053 18 2.0 18 94 0 63 55 13 8 22 1.65
119536--119569 17 2.0 17 100 0 68 47 0 17 35 1.48
121290--121315 12 2.2 12 100 0 52 57 0 7 34 1.27
134224--134258 12 2.9 12 91 0 52 71 8 5 14 1.29
136443--136478 18 2.0 18 94 0 63 22 8 13 55 1.65
138017--138082 32 2.1 32 91 5 107 25 6 25 42 1.78
141609--141680 38 1.9 37 94 2 126 20 25 22 31 1.98
146206--146243 18 2.1 18 100 0 76 63 5 10 21 1.46
146743--146777 17 2.0 17 88 5 52 82 0 8 8 0.83
146743--146803 19 3.3 18 72 2 50 77 0 13 9 1.00
154517--154630 18 6.3 18 96 0 210 33 26 10 29 1.90
156995--157069 21 3.2 24 72 12 75 57 9 22 10 1.61
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Tables: 1
The End!