OP794340.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OP794340.1 UNVERIFIED: Uncaria tomentosa chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 156390
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4423--4448 13 2.0 13 100 0 52 61 7 15 15 1.55
6742--6771 15 2.0 15 100 0 60 33 6 6 53 1.53
9082--9117 18 2.0 18 100 0 72 44 0 5 50 1.25
28003--28028 13 2.0 13 100 0 52 61 15 0 23 1.33
32945--32979 18 1.9 18 88 0 52 31 14 11 42 1.81
33770--33806 18 2.1 18 100 0 74 43 10 10 35 1.75
37452--37497 23 2.0 23 100 0 92 30 26 4 39 1.75
37453--37496 11 3.9 11 88 5 70 29 27 4 38 1.76
43599--43644 23 2.0 23 100 0 92 39 4 21 34 1.73
47467--47497 14 2.2 14 100 0 62 32 6 12 48 1.67
47965--48004 19 2.1 19 100 0 80 37 5 15 42 1.68
52240--52267 14 2.0 14 100 0 56 28 7 21 42 1.79
52885--52936 26 2.0 26 92 0 86 50 0 0 50 1.00
59482--59538 18 3.2 18 100 0 114 43 12 22 21 1.85
60875--60905 15 2.1 15 93 0 53 29 16 0 54 1.42
65462--65504 21 2.0 21 86 4 59 58 4 16 20 1.56
69858--69898 21 2.0 21 100 0 82 29 24 9 36 1.87
73163--73188 13 2.0 13 100 0 52 15 0 0 84 0.62
77105--77161 28 2.0 28 100 0 114 33 17 7 42 1.76
78889--78922 17 2.0 17 100 0 68 23 5 23 47 1.73
81596--81639 22 2.0 22 100 0 88 45 4 22 27 1.72
90811--90865 24 2.5 22 85 8 67 14 23 12 49 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90811--90893 21 3.8 22 77 9 80 13 24 10 51 1.72
93255--93294 18 2.2 18 95 0 71 32 7 25 35 1.84
101048--101099 26 2.0 26 100 0 104 26 11 23 38 1.89
110504--110539 18 2.0 18 100 0 72 22 11 5 61 1.50
111750--111791 20 2.1 20 100 0 84 71 9 0 19 1.13
112429--112464 18 2.0 18 94 0 63 25 25 5 44 1.75
115530--115564 15 2.3 15 95 0 61 34 8 17 40 1.80
128608--128664 15 4.0 15 72 19 50 0 24 5 70 1.08
131094--131129 18 2.0 18 100 0 72 61 5 11 22 1.50
131094--131141 18 2.7 18 90 6 62 60 6 12 20 1.54
140534--140585 26 2.0 26 100 0 104 38 23 11 26 1.89
148339--148378 18 2.2 18 95 0 71 35 25 7 32 1.84
150751--150804 21 2.6 21 82 11 74 59 11 20 9 1.59
150740--150822 21 3.8 22 76 9 71 51 10 24 13 1.72
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Tables: 1
The End!